Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1139 ATGTTAGAGCAGTTACTGATATTTACAAGAGGAGGGTTAATCCTCTGGACATGTAAAGAACTTGGGAATGCTCTGAAAGGTTCCCCTATAGATACCTTGATTCGTTCATGTCTTTTGGAGGAGCGATCCGGTGCGGCATCATACAATTATGATGCTCCTGGTGCTTCCTACACCCTCAAGTGGACCTTCCACAATGAACTTGGCCTTGTGTTTGTGGCTGTGTACCAACGGATTCTTCATCTCTTGTATGTGGAAGATCTGCTTGCTATGGTGAAGCGTGAGTTTTCGCAGATCTATGATCCCAAAAGGACTGCCTACCCTGATTTTGATGAGACCTTTAGGCAGCTAAAGATGGAGGCTTTGGCCCGTGCCGAAGATTTGAAGCGGTCGAGTCCAAATCCTGTTGCTGGGAATGCTAAGAAGCAGGTGCAGGGGAACAATAAATCGGAATTCGAGGGAGGGAATAAGAAGAAGAGTGGTGGTGTGGCGAAGGATGGTGGTGGGAAAGATGGTGACGGTGGCAATGGACGGAGGTCTGAGAATGGACACTCCAATGGAAATTTTGTTGTTGCTAAAGATACTAACCTGAGTAGTAATGTGAATGGTAGACAGAATGGAAGTCCCAATGGTGGGGCTTTTGATGTACATAAGCTTCAGAAGCTTAGGACCAAAGGTGGGAAGAAGGTAGATACTACTGCAAAGGCTTCCAAGGCAGAGCCAAACAAAAAAGTCATAAAGAAAAATAGGGTGTGGGATGATGCTGCTACTACTGAAACTAAATTGGACTTTACAGATCATTCTGCAGAGGACGGGGACAGGAACATAGATTTTGTGGTTGCAGATCAAGGTGAAAGTATGATGGATAAAGAAGAGATAGTTAGTTCTGAAAGTGAGGAGGAAGAAGAGGATGAGAATGTCGGAAACAAGAGAAAGCCTGATGCCAAAAACAAGGGTTGGTTTTCATCCATGTTCCAGAGTATTGCAGGGAAGGCAAATTTGGAGAAGTCAGACTTAGAACCAGCTTTGAAAGCTCTAAAGGATAGGCTCATGACCAAGAATGTGGCTGAGGAGATAGCTGAGAAACTCTGTGAATCAGTTGCAGCAAGTCTTGAAGGCAAAAAGCTGGCTTCATTTACAAGGATATCTTCAACAGTGCATGCGGCAATGGAAGAAGCTCTTATTCGAATTTTAACTCCTAGACGTTCTATTGATATACTGAGGGATGTGCATGCTGCCAAAGAGCAAAGGAAACCGTATGTTGTTGTATTTGTTGGTGTTAATGGTGTTGGAAAATCTACTAATCTAGCTAAGGTTGCTTATTGGCTTCTGCAGCACAAGGTCAGTGTCATGATGGCTGCCTGTGACACATTTCGATCGGGAGCTGTTGAACAGCTGCGGACCCATGCTCGGAGACTTCAGATACCAATATTTGAAAAGGGCTATGAGAAAGATCCTGCCATTGTTGCAAAAGAAGCAATTCAAGAAGCTTCTCACAATGGTTCGGATGTGGTTCTCGTTGACACTGCTGGTCGTATGCAGGATAATGAACCACTTATGAGAGCACTGTCAAAACTCATCTACCTTAACAATCCAGATCTTGTCCTATTTGTTGGAGAAGCACTGGTTGGTAATGACGCAGTTGATCAGCTTTCAAAGTTCAATCAGAAATTAGCCGACCTTGCAACATCACCCAACCCAAGATTGATTGATGGGATCTTGCTCACAAAGTTTGACACCATTGATGATAAGGTAGGAGCAGCACTTTCCATGGTTTACATTTCTGGAGCTCCTGTGATGTTTGTGGGCTGTGGACAGTCTTACACTGACCTCAAGAAACTCAATGTCAAATCAATTGTGAAGACTCTTCTTAAATGA 1875 0.4389 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGASYTLKWTFHNELGLVFVAVYQRILHLLYVEDLLAMVKREFSQIYDPKRTAYPDFDETFRQLKMEALARAEDLKRSSPNPVAGNAKKQVQGNNKSEFEGGNKKKSGGVAKDGGGKDGDGGNGRRSENGHSNGNFVVAKDTNLSSNVNGRQNGSPNGGAFDVHKLQKLRTKGGKKVDTTAKASKAEPNKKVIKKNRVWDDAATTETKLDFTDHSAEDGDRNIDFVVADQGESMMDKEEIVSSESEEEEEDENVGNKRKPDAKNKGWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVHAAMEEALIRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAKEAIQEASHNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLATSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1139 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 623 IPR027417 -
Vra3g1139 624 Gene3D - 284 400 IPR042101 -
Vra3g1139 624 MobiDBLite consensus disorder prediction 286 315 - -
Vra3g1139 624 MobiDBLite consensus disorder prediction 126 190 - -
Vra3g1139 624 SMART AAA_5 417 557 IPR003593 -
Vra3g1139 624 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 318 399 IPR036225 -
Vra3g1139 624 PANTHER BNAA01G06530D PROTEIN 1 624 - -
Vra3g1139 624 SMART SRP54_3 418 624 IPR000897 GO:0005525|GO:0006614
Vra3g1139 624 MobiDBLite consensus disorder prediction 151 177 - -
Vra3g1139 624 Pfam Signal recognition particle, alpha subunit, N-terminal 28 300 IPR007222 GO:0003924|GO:0005047|GO:0005525|GO:0005785|GO:0006886
Vra3g1139 624 SMART SRP54_N_2 315 397 IPR013822 GO:0005525|GO:0006614
Vra3g1139 624 Gene3D - 402 624 IPR027417 -
Vra3g1139 624 CDD SRalpha_C 431 622 - -
Vra3g1139 624 Pfam SRP54-type protein, helical bundle domain 320 389 IPR013822 GO:0005525|GO:0006614
Vra3g1139 624 Gene3D - 1 124 - -
Vra3g1139 624 Pfam SRP54-type protein, GTPase domain 419 623 IPR000897 GO:0005525|GO:0006614
Vra3g1139 624 SUPERFAMILY SNARE-like 1 120 IPR011012 -
Vra3g1139 624 PANTHER SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA 1 624 - -
Vra3g1139 624 CDD SR_alpha_SRX 3 116 - -
Vra3g1139 624 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 597 610 IPR000897 GO:0005525|GO:0006614
Vra3g1139 624 MobiDBLite consensus disorder prediction 135 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1139 Vra-Chr3 11990432 11994139 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1139 K13431 - gmx:100805636 1088.56