Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1138 ATGACATTGGCATATTCATTTTCTACTCCTCAGGTTCACGCATACCACAATCCAACCAGAAGAAGCCACTTTCAGATAAAACGCAAGCCTAACCGAACCAACCACTTTCTCTTAATACCAACTTCTTCACCTTCCTCCTTCCTCTTCTCTTGTTCATCCTTCCCTCTCACATATTCAGATTCAACCCTACAATTTCGCCACAACCACCTTCTATCCACCGATGGCAATTTTGTCGTCGAAGACCTTGCTGCGGCGCTGGAGGAGGAAGCCAGCCCAACGCCGGCGAGGGTTTTCGTCCAGGAGCCGCCGTGGCTCTTCCTCAAGGGGTTGCTCATGCAGGAGGAAGAGATGAGGCGGAAGGAGGAAGAGATGAGGCAGAAGGAGAAAGAGAGGGAAAAGTACAATTGCCTGCGGCGGAGGCAGATTGAGGCGGAGACTGAGGCGTGGCAGAAGATGGTGGAGGAGTACAGGGAATTGGAGAGGGAGATGCGCCAGAAGATGTTGGCGCCCAATTTGCCGCACGTTAAGGCGCTTCTATTGGGCTGGTTCGAGCCTTTCAGGACCGTAGTGGAGGCTGAGCAGAAAGCTCACCGCGCACGTTCCAAGAAGCAGCAGGAATCTATTGCACCCCATGTCGATGACTTGCCGTCCGATAAGGTGGCGGTCATTGTGATGCATAAGATGATGGCCATGGTAATGGAGAATGAGGAAGGCTGCGTTCAGCTTGTTCATGCGGCTGTTCATATTGGCATGGCGGTAGAACAGGAGGTTAGGATTCATAAGTTCATTGAAAGAAGAAAAACTAGCCGGAGTAACAAGATAGAGGCTGATGACGAAGACAGTTTGGATAGTAATAAAGAAAAGCAAAGGAATCATTTGAACAGTTTGATTAAAAAAAATAGACTGAAAGAAGTGCAGATGATATTGAAAAAAGAAGAATGCAGTCCTTGGAGCCGGGACACGCAGGCCAAGCTGGGAAGTCGATTAATAGAATTGTTAGTTGATACAGCATATGTACACTCTCCGGTTAACCAGTTTGGTGATACTCCGCCTGATATCCGACCGGCTTTCAGGCACTGTTTTAAAGCTGCACCATGGCATCCAGGGCAAAAGTTTTCAAAGAAGTATGGTGTTATACAATGTGATCCCTTAGTCCTAGTTGGGCTTGAACAATGTGCTAAGCATATGTTCATACCTTACATGCCTATGTTAGTACCTCCCAAAAAATGGAAAGGATATGACAAGGGCGGACACTTTTTCTTACCATCTTATATTATGCGTACTCATGGATCTAGAAAGCAACAAGATGTAATGAAGAGTGTAAATGCAGCGCAAATGCAAAAGGTTTTTGAGGCCTTGGATATTCTTGGAAACACCAAATGGCGAGTAAACAAAAGAGTGCTTGGAGTTGTTGAGTCAATTTGGGCAGGAGGAGGTAACATTGCAGGACTGGTTAATTGCAAAGACGTTCCTTTACCAGATAAGCCACCTGTAGAGGATTTAAAGCTAATTCAGGAGTGGAAATGTGGTCTACGGAAGGCGAAAAAAATTAATATGGAAAGGCATTCTCTAAGATGTGACACTGAACTTAAGCTTTCTGTGGCAAGAAAAATGAAGGACGAGGAATGCTTTTATTATCCGCACAATCTTGACTTCCGTGGCAGAGCATATCCTATGCATCCTCACTTGAATCATTTAGGTTCTGATCTGTGTCGAGGACTACTTGAATTTGCAGAAGGGAAGCCACTGGGAAAGGGTGGACTAAGGTGGCTGAAGATACATCTAGCAAATTTGTATGCTGGTGGTATTGAGAAGCTATCTTATGACGGGCGGTTAGCATTTATAGAGAATCATATTAATGATATAATTGATTCTGCTGATAACCCTGTTAATGGAAATCGTTGGTGGTTAACTGCCGAGGATCCTTTTCAGTGCCTTACTGCTTGTATTAATCTATCAGAGGCATTGAAAAGCTCTTCACCAAATTCTTTTATCTCACATCTTCCAATTCATCAGGATGGTTCCTGTAATGGCTTACAACACTATGCAGCACTAGGAAGAAATGAGCCGGAGGCTGCAGCTGTTAACTTAGTAGCTAAGGAGAAACCTGCTGATGTATACACAGAGATTGCTGTTAGGGTTTATGATATAATGAGACGAGACAGCAGCAAGGACCCAGATACCTTTCCAAATGCTTTGTTAGCAAAGGTGTTGATTGATCAGATTGATAGGAAACTGGTCAAACAGACGGTAATGACTTCTGTTTATGGTGTTACTTTTATTGGGGCGCGGGAACAAATTAAGAGAAGATTAGAGGAGAAAGGTCTCATTGATGATGATAGACTTTTATATGCTGCAGCTTGCTATGCAGCTAAGGTGACATTGGCTGCCCTTGGAGAAGTTTTTGAGGCTGCACGTGGCATCATGAGTTGGCTTGGGGATTGTGCAAAGGTGATTGCTAGTGAAAATCAGGCTGTTTACTGGACCACTCCTCTAGGTCTTCCTGTTGTACAACCATACTGTAAAAGTGAACGTTATCAGATAAGAACATCTCTTCAGCTTTTGGCTTTGCAGAGGGAGGGGAGTGCTGTATCTGTCAAGAAGCAGAGAAGTGCATTTCCTCCTAACTTTGTACATTCATTGGATAGTTCACACATGATGATGACTGCTCTGGCCTGCAATGATGCTGGATTATGTTTTGCAGGGGTTCATGATTCATTTTGGACGCACCCTTGCGACGTTGAGAAAATGAATCAAATTCTGAGAGAAAAATTTGTGGAGCTTTATAACATGCCCATACTTGAAAATTTGCTCGAGGGCTTCGAGACTACATATCCAGGATTGGCTTTCCCCTCATTGCCAAAGAGAGGTGAGTTTGACTTAGAGAAGGTTCTTGATTCTCCGTACTTCTTCAACTGA 2919 0.4426 MTLAYSFSTPQVHAYHNPTRRSHFQIKRKPNRTNHFLLIPTSSPSSFLFSCSSFPLTYSDSTLQFRHNHLLSTDGNFVVEDLAAALEEEASPTPARVFVQEPPWLFLKGLLMQEEEMRRKEEEMRQKEKEREKYNCLRRRQIEAETEAWQKMVEEYRELEREMRQKMLAPNLPHVKALLLGWFEPFRTVVEAEQKAHRARSKKQQESIAPHVDDLPSDKVAVIVMHKMMAMVMENEEGCVQLVHAAVHIGMAVEQEVRIHKFIERRKTSRSNKIEADDEDSLDSNKEKQRNHLNSLIKKNRLKEVQMILKKEECSPWSRDTQAKLGSRLIELLVDTAYVHSPVNQFGDTPPDIRPAFRHCFKAAPWHPGQKFSKKYGVIQCDPLVLVGLEQCAKHMFIPYMPMLVPPKKWKGYDKGGHFFLPSYIMRTHGSRKQQDVMKSVNAAQMQKVFEALDILGNTKWRVNKRVLGVVESIWAGGGNIAGLVNCKDVPLPDKPPVEDLKLIQEWKCGLRKAKKINMERHSLRCDTELKLSVARKMKDEECFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGLLEFAEGKPLGKGGLRWLKIHLANLYAGGIEKLSYDGRLAFIENHINDIIDSADNPVNGNRWWLTAEDPFQCLTACINLSEALKSSSPNSFISHLPIHQDGSCNGLQHYAALGRNEPEAAAVNLVAKEKPADVYTEIAVRVYDIMRRDSSKDPDTFPNALLAKVLIDQIDRKLVKQTVMTSVYGVTFIGAREQIKRRLEEKGLIDDDRLLYAAACYAAKVTLAALGEVFEAARGIMSWLGDCAKVIASENQAVYWTTPLGLPVVQPYCKSERYQIRTSLQLLALQREGSAVSVKKQRSAFPPNFVHSLDSSHMMMTALACNDAGLCFAGVHDSFWTHPCDVEKMNQILREKFVELYNMPILENLLEGFETTYPGLAFPSLPKRGEFDLEKVLDSPYFFN* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1138 972 Pfam DNA-directed RNA polymerase N-terminal 140 458 IPR029262 -
Vra3g1138 972 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 1. 669 680 IPR002092 GO:0003677|GO:0003899|GO:0006351
Vra3g1138 972 Gene3D - 691 879 - -
Vra3g1138 972 SUPERFAMILY DNA/RNA polymerases 127 972 IPR043502 -
Vra3g1138 972 PANTHER DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL 42 972 IPR002092 GO:0003677|GO:0003899|GO:0006351
Vra3g1138 972 Coils Coil 107 162 - -
Vra3g1138 972 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 2. 742 756 IPR002092 GO:0003677|GO:0003899|GO:0006351
Vra3g1138 972 MobiDBLite consensus disorder prediction 268 290 - -
Vra3g1138 972 Pfam DNA-dependent RNA polymerase 581 972 IPR002092 GO:0003677|GO:0003899|GO:0006351
Vra3g1138 972 Gene3D - 581 659 - -
Vra3g1138 972 Gene3D - 116 458 IPR037159 -
Vra3g1138 972 SMART RPOL_N_2 139 458 IPR029262 -
Vra3g1138 972 PANTHER DNA-DIRECTED RNA POLYMERASE 42 972 - -
Vra3g1138 972 Gene3D - 459 541 IPR024075 GO:0003899
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1138 Vra-Chr3 11960076 11987010 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1138 K10908 - gmx:100783185 1737.24