Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1124 ATGAATCCCGAGAAGTTTACGCACAAGACTAATGAAGCTCTCGTGAGTGCTCACCAGACAGCGGTGAGCAGTGGCCACGCACAGTTTACTCCTCTCCATCTAGCATCCTCTCTACTTTCCGACAAGGGAGGAATCTTCTCCCAAGCGCTATCCAACGCGGCAGGAGAGGAATCGGCGCGCGCGGCGGAGAGAGTCTTCAGCCAAGCACTGAAGAAGTTGCCCTCACAATCTCCTCCTCCTGACGAGGTTCCAGCGAGTACGAGCCTCATCAAAGTCATACGCAGAGCGCAGTCGCTCCAGAAGACGCGTGGTGACACACACCTGGCAGTCGACCAGCTCATCCTTGGACTTTTGGAAGATTCTCAGATCACAGAGTTGCTCAGAGAAGCCGGTGTGGCGGCACAGAAGGTGAAATCAGAAGTGGAGAAGCTTCGCGGTAAGGAAGGAAGGAAAGTGGAAAGCGCCACCGGTGACACAACCTTTCAGGCGTTGAATACCTATGGAAGAGATCTTGTGGAACAAGCAGGGAAACTCGACCCAGTTATTGGAAGGGATGAGGAAATACGAAGGGTTGTGAGAATTTTATCTAGAAGGACGAAAAATAACCCGGTTTTGATTGGTGAACCGGGTGTTGGAAAAACGGCTGTGGTTGAAGGGTTGGCTCAGAGGATTGTTAAAGGGGATGTTCCTAGTAATCTATCTGATGTTAGACTCATTGCATTGGATATGGGTGCGTTGGTTGCAGGCGCGAAGTATAGAGGGGAGTTTGAGGAGAGGTTGAAGGCAGTTTTGAAAGAGGTTGAAGAGGCTGAGGGGAAAGTTATTCTGTTTATTGATGAGATTCATCTGGTTCTTGGTGCTGGAAAGGCAGAGGGTTCCATGGATGCTGCAAATTTGTTTAAACCTATGCTTGCGCGGGGTCAATTGAGATGCATTGGTGCCACCACCCTTGAAGAGTATAGGAAGTATGTAGAGAAGGATGCAGCCTTTGAAAGAAGGTTTCAGCAGGTGTATGTGACGGAACCAAGTGTTGTTGATACTGTAAGTATACTTCGTGGTTTGAAAGAAAGATACGAAGGTCACCATGGTGTAAGGATTCTTGATCGAGCTTTGGTTGTTGCTGCGCAACTATCTAGTCGCTACATCACTGGTCGTCATCTTCCTGACAAGGCAATTGATTTAGTTGATGAGGCTTGTGCGAATGTAAGAGTCCAACTTGATAGCCAGCCAGAGGAAATTGACAACCTTGAAAGGAAGAGAATGCAGTTAGAAGTGGAACTTCATGCTCTAGAAAAAGAGAAAGACAAAGCTAGCAAAGCTCGTTTAGTAGAAGTGCGGAAAGAGCTTGATGACTTGAGAGATAAGCTGCAACCTTTGATGATGAAGTACAGAAAGGAGAAGGAGAGGATAGATGAGATTCGAAGACTAAAGCAAAAAAGGGAAGAGCTGAATTTTGCTCTTCTAGAGGCTGAGAGACGATATGATCTTGCCAGAGCTGCAGATTTGCGGTATGGTGCAATTCAGGAGGTGGAATCTGCAATTCAAGAGCTGGAAGGGAACACCGAAGAGAATGTAATGTTGACAGAAACGGTTGGACCTGAACATATTGCTGAGGTTGTTAGTCGTTGGACTGGCATACCAGTAACAAGACTCGGGCAAAATGACAAAGAAAGGTTGATTGGTCTTGCTGACAGATTGCACGAGAGAGTTGTAGGGCAAGACCAAGCCGTTAATTCTGTAGCAGAGGCTGTGCTGAGATCAAGAGCTGGGCTTGGGAGACCTCAACAGCCAACAGGGTCCTTCCTGTTCTTGGGTCCAACTGGTGTTGGCAAGACCGAGCTTGCAAAGGCCCTTGCCGAACAACTTTTTGACAATGAAAATCAATTGGTTAGAATTGACATGTCTGAATACATGGAGCAACATTCTGTTTCACGCTTGATTGGTGCACCACCTGGGTATATTGGACATGAAGAAGGTGGTCAGCTAACTGAAGCAGTAAGGCGAAGACCTTATAGTGTGGTATTGTTTGATGAAGTAGAAAAGGCACACATATCTGTGTTTAACACTCTTCTTCAAGTCTTGGATGATGGGAGGTTAACTGATGGCCAAGGCCGCACTGTGGACTTTAGAAACACAGTCATTATTATGACTTCTAACCTTGGGGCAGAACACCTCCTTACTGGACTTTCAGGAAAATCTTCAATGCAAGCGGCTCGTGATAAAGTAATGCAGGAGGTAAAAAGACATTTTAGGCCAGAACTGTTGAACCGACTTGATGAAATTGTTGTATTTGATCCTCTTTCGCACGAGCAACTCAGAAAGGTTGCAAGGTTACAAATGAAGGACGTTGCCTCCCGTCTTGCTGAGAGGGGAATTGCAATGGCAGTGACTGATGCAGCTCTTGATTATATTCTTAGTGAAAGCTATGATCCGGTTTATGGTGCCAGACCAATTAGGAGGTGGCTTGAGAAAAAGGTTGTGACAGAGCTTTCTAGAATGCTGGTGAAGGAAGAAATTGATGAGAACTCAACAGTTTACATTGATGCTGGTCCTGCGGGTGGCGAGCTAAACTATCGGGTGGAAAAGAATGGAGGGTTGGTTAATGCTGTAACTGGTCAGAAGTCTGATATTTTGATTCAGATGCCTAATGGAGGAGTATCAAGATCTGATGCTGTCCAGGCAGTGAAGAAGTTAAAGATTGAGCAAATGGATGAGGATGAAGATGGTGAAATGGAGATGTGA 2742 0.4613 MNPEKFTHKTNEALVSAHQTAVSSGHAQFTPLHLASSLLSDKGGIFSQALSNAAGEESARAAERVFSQALKKLPSQSPPPDEVPASTSLIKVIRRAQSLQKTRGDTHLAVDQLILGLLEDSQITELLREAGVAAQKVKSEVEKLRGKEGRKVESATGDTTFQALNTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPSNLSDVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGKAEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVTEPSVVDTVSILRGLKERYEGHHGVRILDRALVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMKYRKEKERIDEIRRLKQKREELNFALLEAERRYDLARAADLRYGAIQEVESAIQELEGNTEENVMLTETVGPEHIAEVVSRWTGIPVTRLGQNDKERLIGLADRLHERVVGQDQAVNSVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDNENQLVRIDMSEYMEQHSVSRLIGAPPGYIGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLTGLSGKSSMQAARDKVMQEVKRHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVASRLAERGIAMAVTDAALDYILSESYDPVYGARPIRRWLEKKVVTELSRMLVKEEIDENSTVYIDAGPAGGELNYRVEKNGGLVNAVTGQKSDILIQMPNGGVSRSDAVQAVKKLKIEQMDEDEDGEMEM* 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1124 913 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 4 861 - -
Vra3g1124 913 Coils Coil 463 493 - -
Vra3g1124 913 Pfam AAA domain (Cdc48 subfamily) 597 761 IPR003959 GO:0005524|GO:0016887
Vra3g1124 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 545 IPR027417 -
Vra3g1124 913 SMART AAA_5 199 344 IPR003593 -
Vra3g1124 913 SMART AAA_5 597 749 IPR003593 -
Vra3g1124 913 ProSiteProfiles Clp repeat (R) domain profile. 3 147 IPR004176 -
Vra3g1124 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 546 848 IPR027417 -
Vra3g1124 913 Pfam Clp amino terminal domain, pathogenicity island component 17 57 IPR004176 -
Vra3g1124 913 Pfam Clp amino terminal domain, pathogenicity island component 96 146 IPR004176 -
Vra3g1124 913 Gene3D - 550 766 IPR027417 -
Vra3g1124 913 CDD AAA 182 337 - -
Vra3g1124 913 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 601 619 IPR001270 GO:0005524
Vra3g1124 913 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 646 664 IPR001270 GO:0005524
Vra3g1124 913 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 675 693 IPR001270 GO:0005524
Vra3g1124 913 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 708 722 IPR001270 GO:0005524
Vra3g1124 913 Coils Coil 406 455 - -
Vra3g1124 913 Pfam AAA lid domain 344 443 IPR041546 -
Vra3g1124 913 Gene3D - 3 148 IPR036628 -
Vra3g1124 913 PANTHER ATP-DEPENDENT CLP PROTEASE 4 861 - -
Vra3g1124 913 Pfam C-terminal, D2-small domain, of ClpB protein 767 847 IPR019489 -
Vra3g1124 913 SUPERFAMILY Double Clp-N motif 4 157 IPR036628 -
Vra3g1124 913 CDD AAA 571 766 - -
Vra3g1124 913 Gene3D - 150 343 IPR027417 -
Vra3g1124 913 Gene3D - 344 544 IPR027417 -
Vra3g1124 913 Gene3D - 767 865 - -
Vra3g1124 913 Coils Coil 253 273 - -
Vra3g1124 913 Pfam ATPase family associated with various cellular activities (AAA) 204 317 IPR003959 GO:0005524|GO:0016887
Vra3g1124 913 ProSitePatterns Chaperonins clpA/B signature 1. 295 307 IPR018368 GO:0005524
Vra3g1124 913 ProSitePatterns Chaperonins clpA/B signature 2. 631 649 IPR028299 -
Vra3g1124 913 SMART ClpB_D2_small_2 767 858 IPR019489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1124 Vra-Chr3 11755016 11759207 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1124 K03695 - egr:104426006 1559.27