Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1122 ATGTTGATTCAGATTCCTCGCCTCACCAATTCTCTCAGAGACCCCTTCGATGTCGACCAGTACTATCTTCATCGCAAAACCATTCTCCATAATCAAAAACCTCGCAATTCTGCAAGTTCTCTTGATGAATCGGAACTCGCGCGGAAGATTGTTCAAGGGTGGGAAGAAGCAGCTTCTTCGGAAGTGCGACAAGCCTACAAGCAGTTTATAGGAGCAGTGGTGGACATGGTTGACGGAGAAATGCGCTCTGAGGAGTTCCATGAGGTGGCAATGGCTGTGTACCGGCTATTTGGGACTCCAATGGAGGAGGGTTACATTGATAAAATTATTTCAGACAAAAACAGGTTTGAATTACAAAAGCTTATTGGACACACACTTGCTGATGCCAAGTTGAGGCAAGTTGCATCACTAGCACAGAGGCTTTTAAATTTACAGCCGCTCAATAAAATGTCTGCCATTTCTAGTGAAAGAAACTTAGATGCTGATGACGATTTAGAATTTGGAGCTGATTTGTTTTTTCAAGCACCTGCTCGTTTCTTGGTTGATGTATCCTTAGATGAGGTAGATATGATGGATTTTGAAAGCATTGTTCCATTAGAATTTCACAATGAACAGTATGGTCATACCAGCCCAGCAGATCATTCTATTGTCGATGGGGAAAAGTTCAACTTGGCTTGGATAAGAGATGCATGTGATAAAATTGTTAGGAATTGTGATTCACAGCTATCCCAAGATGAATTGGCAATGGCCATTTGCCGGGTTCTTAATTCAGAAAAGCCCGGTGAAGAGATAGCTGGAGATCTGTTGGATCTTGTTGGTGATAGTGCATTTGAAACTGTGCAAATCTTTTTATTGCATCGAAAGGAGATTGTTGAATCTATTCATCATGGATTATTGGTATTGAAGTCTGATAAAAATTCTTCAAATGCTCAGTCTCGCATGCCTAGTTATGGAACACAGGTCACTGTTCAAACAGAGTCAGGAAAGCAAATTGACAAGCTTCGACGCAAGGAGGAAAAACGAAATAGACGGGTAATAGAACATGCTGGTGATGGTGACTTGTCTGTGCTGGATTTCTCATCTTTACTTCAAGCAAGTGAGAGGAAAAATTTGTTTGATGAGATGATTGGGTCTGGAGATAGGTCCGAGTCAATAGCTGTTACTGCTCTTCCTGAAGGAACTGTAAGGAAGCATTTTAAGGGGTACGAAGAGGTTATTATTCCCCCAAAACCAACTGCACCGTTGAAACCTGGAGAAAAGCTGATCGAGATCCGGGAGTTGGATGACTTTGCACAAGCTGCATTCCGTGGGTACAAATCACTAAACCGAATCCAGAGCAGGATATTTTCAACTGTTTATGGAACTAATGAGAATATTCTAGTGTGTGCTCCCACTGGTGCTGGCAAAACTAATATAGCCATGATTTCAATTCTACATGAGATTGGACAACACTTCAGGGACGGGTACTTGCATAAAGATGAATTTAAGATAGTTTATGTCGCGCCAATGAAGGCTTTGGCTGCTGAAGTCACCTCAACATTCAGCCAACGTTTATCTCCTTTGAATATGATTGTTAGAGAGCTTACCGGAGATATGCAGCTTTCTAAAAATGAGCTTGAAGAAACTCAGATGATAGTGACAACACCTGAGAAATGGGATGTCATTACACGCAAAAGCAGTGACATGTCACTGTCAATGCTGGTAAAGCTGTTAATTATTGATGAAGTCCATCTACTCAATGATGATCGAGGTCCTGTGATAGAGGCTCTGGTTGCTAGGACGCTCCGGCAGGTGGAATCTACACAGACAATGATACGCATTGTGGGCCTTTCTGCCACTCTTCCCAATTACCTAGAGGTTGCACAATTTCTCAGGGTAAATCCTGACACAGGCCTTTTCTTCTTTGACTCTAGTTACCGTCCAGTGCCTCTTGCACAACAATATATTGGAATTAGTGAGCCAAACTTTGCGGCTCGTAACGAATTGTTGAATGATATATGCTATAGAAAGGTTGCTGATTCTCTAAGGCAAGGCCACCAGGCAATGGTATTTGTCCACTCCCGAAAGGACACTGTCAAGACAGCTAATAAACTGGTTGAACTAGCACGGAGGAATGAGGATTTGGAACTTTTTAGTAATAATACACATCCACAATACACCTTTATGAAGAAAGAAGTCATTAAATCCAGAAACAAAGATCTTGTTGAACTTTTTGAATATGGTGTGGGCGTGCATCATGCTGGGATGCTACGTGCAGATAGAGGACTTACTGAGCGACTTTTCTCTGATGGACTTCTGAAGGTTCTTGTCTGTACAGCAACTTTGGCATGGGGTGTCAATCTACCTGCACACACGGTGGTCATTAAGGGTACCCAACTATATGATCCAAAAGCCGGGGGTTGGCGAGACCTTGGTATGCTTGATGTTATGCAGATATTTGGGCGAGCTGGGAGACCTCAGTTTGACAAAAGTGGTGAAGGTATTATAATTACGTCACATGACAAACTAGCTTATTATCTGCGACTGTTGACAAGCCAACTCCCGATTGAAAGCCAGTTCATTAGCTCCTTGAAAGATAATTTGAATGCAGAAGTGGCATTGGGTACTGTAACTAATGTTAAGGAAGCCTGTGCTTGGCTGGGCTATACTTATCTTTTTATAAGGATGAAGATGAATCCTTTAGCCTATGGTATTGGGTGGGACGAGGTGATGGCGGATCCTGCTCTTAGTTCTAAGCAGAGGTCTCTTGTAATTGATGCTGCACGTGCCCTTGATAAAGCAAAAATGATGCGTTTTGATGAGAAAAGTGGCAATTTTTATTGTACCGAGCTTGGTCGCATTGCAAGTCATTTTTACATTCAATATTCCAGTGTTGAAACATACAATGAAATGCTGAGACGGCACATGAATGACAGTGAGGTGATTAACATGATTGCACATTCTTCTGAATTTGAAAATATTGCTGTTCGAGAAGAAGAACAAAATGAGCTAGAGATGTTGGCACGCACATCATGTCCATTGGAAATTAAGGGTGGTCCTTCCAATAAACATGGAAAAATTTCCATTTTGATTCAGTTGTACATATCTCGAGGTTCTATGGATTCTTTTTCTTTGGTATCTGATGCTGCATATATTAGTGCAAGCTTGGCTCGAATAACACGGGCTTTATTTGAGATTTGTTTACGAAGAGGCTGGTGTGAAATGACTCTGTTCATGCTGGAATATAGCAAAGCTGTGGATCGTCAAGTTTGGCCACATCAACATCCTCTTAGACAATTTGACAAGGATCTTTCTGCAGAAATATTGAGAAAGCTTGAAGAGCGTGGAGCTGACCTAGATCGCCTATTTGAGATGGAGGAAAAAGACATTGGGGCATTAATTCGGTATGCACCAGGAGGAAGGTTGGTCAAGCAAAACCTAGGGTATTTTCCATCACTTCAGTTATCAGCTACTGTGAGTCCAATTACCAGAACTGTGCTGAAGGTTGATTTGGTCATTACGCCTGTTTTCACTTGGAAAGATCGTTTTCACGGTACTGCTCAACGTTGGTGGATTTTGGTAGAGGATTCTGAGAATGATCACATCTACCACTCGGAACTCTTTACGCTGACAAAGCGGATGGCTAGAGGCGAACCTTACAAGCTTTCCTTCACTGTACCTATATTTGAACCACATCCACCGCAATATTATATCCATGCTGTTTCTGATTCATGGCTTCATGCCGAGGCATTCTACACTATTACTTTTCACAATTTACCATTGCCAGAGGCTCGTACATCTCATACAGAACTCCTTGATTTAAAACCTCTTCCTGTGTCTTCTCTCGGCAACAATGCTTATGAAGGATTGTATAAATTTTCACATTTTAATCCAATACAAACACAGAGTTTTCATACCTTGTATCACACGGACAATAATGTTCTGTTAGGAGCTCCAACTGGAAGTGGAAAAACTATATCTGCCGAGCTTGCTATGCTCCGTCTTTTCAATACACAGCCTGATATGAAGGTTATTTATATAGCTCCTTTGAAAGCAATAGTCAGGGAGAGAATGAGTGATTGGCAAAAGCGTCTTGTCTCTCAACTAAGGAAAAAAATGGTTGAAATGACTGGAGACTATACTCCTGATTTGATGGCTCTTTTGTCAGCCGATATCATCATATCTACTCCTGAAAAGTGGGATGGAATTAGTCGTAACTGGCATACCCGTAGTTATGTCACAAAGGTTGGACTTATGATTTTGGATGAGATTCACTTATTGGGAGCAGATCGTGGGCCAATCCTTGAGGTTATTGTATCTAGGATGAGGTATATATCATCCCAAACAGAGCGACCAGTAAGATTTATCGGCCTTTCTACAGCACTGGCTAATGCTGGTGATCTAGCTGACTGGTTAGGTGTTGAGGAAATTGGACTCTTCAATTTCAAGCCAAGTGTGAGACCTGTACCTCTGGAAGTTCATATTCAGGGTTATCCTGGGAAGTATTATTGCCCAAGGATGAACAGCATGAATAAACCAGCATATGCTGCAATATGCACACATTCACCTGCAAAACCAGTTCTTATATTTGTCTCATCCCGACGCCAGACGAGACTTACTGCACTTGACCTAATTCAGTTTGCTGCATCGGATGAACAATCAAGACAGTTTCTTAATTTGCCTGAGGAAACCCTCCAGATGGTTCTGTCTCAAGTCTCTGACCAAAACCTTAGGCATACTTTGCAATTTGGCATTGGATTACATCATGCTGGCCTGAATGACAAAGACAGATCACTGGTTGAGGAACTCTTTGGAAACAACAAAATTCAGATATTAGTTTGCACCAGCACATTGGCCTGGGGTGTGAATCTTCCAGCTCATCTTGTGATTATCAAGGGAACTGAGTACTATGATGGAAAAGCAAAGAGGTATGTTGATTTTCCAATCACTGATATTTTGCAAATGATGGGTCGTGCTGGGCGCCCTCAGTTTGATCAACATGGGAAAGCTGTGATTCTTGTTCATGAACCCAAAAAGAGCTTCTATAAAAAGTTTTTGTATGAACCCTTTCCTGTTGAGAGTAGTTTGAGGGAGCATTTGCACAATCACATTAACGCTGAAATTATTTCTGGAACCATTTGTCATAAACAAGATGCAGTGCATTATCTTACGTGGACTTATTTATTTCGTAGACTGATGGTAAATCCTGCATACTACGGACTGGAGAATCCTGACTCCGAGTTTCTGAATTCATATTTGTCTAGCTTAGTGCAGGATACATTTGAGGATTTGGAAGACAGCGGATGCATAAAAATGGATGAAGAGAAGGTGGAGCCCATGATGTTGGGTTCAATTGCATCGCAGTATTACCTCAGCTACATGACTGTATCTATGTTTGGTTCTAACATAGGTCCAGATACATCACTTGAAGTCTTTCTGCATATCTTATCTGCTGCTTCTGAATTTGATGAACTACCTGTCCGTCATAATGAGGAAAATTACAATGAAGCTCTTTCTGAGAAAGTTAAATATCCGGTGGATAAGAACCGGCTAGACGACCCTCACATCAAAGCAAATCTTCTGTTTCAGGCTCATTTTTCTCAATTGGAGTTACCCATTAGTGACTATGTCACAGACTTGAAATCCGTATTAGATCAGAGTATACGCATAATTCAGGCAATGATTGATATATGTGCAAACAGTGGGTGGCTTTCTAGCTCAATTACTTGCATGCGCCTCCTGCAAATGATCATGCAGGGCTTGTGGTTTGGCAAGGACTCTTCCTTATGGATGCTTCCTTGCATGAATACAGATCTGATAAATTCTCTTAGCCAAAGAGGAATTTGTAGTGTACAGGAATTACTAGACATTCCCAAAACAGCATTGCAGACTCTAACTGCAAATTTCCCAGCTTCAAGATTGTACCAGGATCTACAACATTTCCCTCATATTAAAGTGAAATTAAAGATTCAGAGGAGGGACACTGATGGTGAGAAGTCAGACATATTAAATATCAGATTAGAGAAGATCAATTCAAGACGACACTCCTCTAGAGCATTTGTTCCTCGTTTTCCAAAGATAAAAGAAGAACAGTGGTGGTTGGTTCTTGCTAATACCTCTACATCTGAGCTATATGCTTTGAAAAGAGTCTCTTTTTCAGATCACTTAAATACCTCAATGAAGTTGCCTCTGACTCCAGCTAACCTTCAGGGTGTAAAACTGATTTTAGTCTCCGATTGTTACATTGGATTTGAACAAGAACACTCCATTGAAAAAGCTTGA 6261 0.4124 MLIQIPRLTNSLRDPFDVDQYYLHRKTILHNQKPRNSASSLDESELARKIVQGWEEAASSEVRQAYKQFIGAVVDMVDGEMRSEEFHEVAMAVYRLFGTPMEEGYIDKIISDKNRFELQKLIGHTLADAKLRQVASLAQRLLNLQPLNKMSAISSERNLDADDDLEFGADLFFQAPARFLVDVSLDEVDMMDFESIVPLEFHNEQYGHTSPADHSIVDGEKFNLAWIRDACDKIVRNCDSQLSQDELAMAICRVLNSEKPGEEIAGDLLDLVGDSAFETVQIFLLHRKEIVESIHHGLLVLKSDKNSSNAQSRMPSYGTQVTVQTESGKQIDKLRRKEEKRNRRVIEHAGDGDLSVLDFSSLLQASERKNLFDEMIGSGDRSESIAVTALPEGTVRKHFKGYEEVIIPPKPTAPLKPGEKLIEIRELDDFAQAAFRGYKSLNRIQSRIFSTVYGTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTSTFSQRLSPLNMIVRELTGDMQLSKNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQTMIRIVGLSATLPNYLEVAQFLRVNPDTGLFFFDSSYRPVPLAQQYIGISEPNFAARNELLNDICYRKVADSLRQGHQAMVFVHSRKDTVKTANKLVELARRNEDLELFSNNTHPQYTFMKKEVIKSRNKDLVELFEYGVGVHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMKMNPLAYGIGWDEVMADPALSSKQRSLVIDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVINMIAHSSEFENIAVREEEQNELEMLARTSCPLEIKGGPSNKHGKISILIQLYISRGSMDSFSLVSDAAYISASLARITRALFEICLRRGWCEMTLFMLEYSKAVDRQVWPHQHPLRQFDKDLSAEILRKLEERGADLDRLFEMEEKDIGALIRYAPGGRLVKQNLGYFPSLQLSATVSPITRTVLKVDLVITPVFTWKDRFHGTAQRWWILVEDSENDHIYHSELFTLTKRMARGEPYKLSFTVPIFEPHPPQYYIHAVSDSWLHAEAFYTITFHNLPLPEARTSHTELLDLKPLPVSSLGNNAYEGLYKFSHFNPIQTQSFHTLYHTDNNVLLGAPTGSGKTISAELAMLRLFNTQPDMKVIYIAPLKAIVRERMSDWQKRLVSQLRKKMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHTRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTERPVRFIGLSTALANAGDLADWLGVEEIGLFNFKPSVRPVPLEVHIQGYPGKYYCPRMNSMNKPAYAAICTHSPAKPVLIFVSSRRQTRLTALDLIQFAASDEQSRQFLNLPEETLQMVLSQVSDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFGNNKIQILVCTSTLAWGVNLPAHLVIIKGTEYYDGKAKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLREHLHNHINAEIISGTICHKQDAVHYLTWTYLFRRLMVNPAYYGLENPDSEFLNSYLSSLVQDTFEDLEDSGCIKMDEEKVEPMMLGSIASQYYLSYMTVSMFGSNIGPDTSLEVFLHILSAASEFDELPVRHNEENYNEALSEKVKYPVDKNRLDDPHIKANLLFQAHFSQLELPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMRLLQMIMQGLWFGKDSSLWMLPCMNTDLINSLSQRGICSVQELLDIPKTALQTLTANFPASRLYQDLQHFPHIKVKLKIQRRDTDGEKSDILNIRLEKINSRRHSSRAFVPRFPKIKEEQWWLVLANTSTSELYALKRVSFSDHLNTSMKLPLTPANLQGVKLILVSDCYIGFEQEHSIEKA* 2087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1122 2086 Gene3D - 429 640 IPR027417 -
Vra3g1122 2086 Gene3D - 641 843 IPR027417 -
Vra3g1122 2086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1475 1684 IPR027417 -
Vra3g1122 2086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 389 625 IPR027417 -
Vra3g1122 2086 Pfam Helicase conserved C-terminal domain 701 818 IPR001650 -
Vra3g1122 2086 Pfam Helicase conserved C-terminal domain 1544 1654 IPR001650 -
Vra3g1122 2086 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1298 1473 IPR014001 -
Vra3g1122 2086 Gene3D C2 domain 1975 2085 IPR035892 -
Vra3g1122 2086 PIRSF BRR2 13 2086 - -
Vra3g1122 2086 SMART Sec63_2 941 1249 IPR004179 -
Vra3g1122 2086 SMART Sec63_2 1772 2085 IPR004179 -
Vra3g1122 2086 CDD SF2_C_Ski2 1480 1668 - -
Vra3g1122 2086 Pfam DEAD/DEAH box helicase 1291 1455 IPR011545 GO:0003676|GO:0005524
Vra3g1122 2086 Pfam DEAD/DEAH box helicase 443 616 IPR011545 GO:0003676|GO:0005524
Vra3g1122 2086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1175 1473 IPR027417 -
Vra3g1122 2086 SUPERFAMILY "Winged helix" DNA-binding domain 848 953 IPR036390 -
Vra3g1122 2086 Gene3D - 1780 1916 - -
Vra3g1122 2086 SUPERFAMILY E set domains 1994 2083 IPR014756 -
Vra3g1122 2086 Pfam Sec63 Brl domain 1772 2083 IPR004179 -
Vra3g1122 2086 Pfam Sec63 Brl domain 941 1247 IPR004179 -
Vra3g1122 2086 SUPERFAMILY Sec63 N-terminal domain-like 969 1144 - -
Vra3g1122 2086 CDD DEXHc_ASCC3_1 440 636 - -
Vra3g1122 2086 CDD SF2_C_Ski2 640 831 - -
Vra3g1122 2086 SUPERFAMILY "Winged helix" DNA-binding domain 1684 1784 IPR036390 -
Vra3g1122 2086 SMART ultradead3 437 648 IPR014001 -
Vra3g1122 2086 SMART ultradead3 1285 1489 IPR014001 -
Vra3g1122 2086 Gene3D - 1086 1140 - -
Vra3g1122 2086 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 662 865 IPR001650 -
Vra3g1122 2086 Gene3D - 1254 1480 IPR027417 -
Vra3g1122 2086 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 450 632 IPR014001 -
Vra3g1122 2086 SUPERFAMILY Sec63 N-terminal domain-like 1805 1960 - -
Vra3g1122 2086 PANTHER SEC63 DOMAIN-CONTAINING 471 2084 - -
Vra3g1122 2086 PANTHER SEC63 DOMAIN-CONTAINING 428 471 - -
Vra3g1122 2086 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1527 1713 IPR001650 -
Vra3g1122 2086 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 428 471 - -
Vra3g1122 2086 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 471 2084 - -
Vra3g1122 2086 Gene3D - 942 1084 - -
Vra3g1122 2086 SMART AAA_5 1303 1474 IPR003593 -
Vra3g1122 2086 SMART AAA_5 455 636 IPR003593 -
Vra3g1122 2086 Gene3D - 1686 1779 IPR036388 -
Vra3g1122 2086 MobiDBLite consensus disorder prediction 307 327 - -
Vra3g1122 2086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 635 848 IPR027417 -
Vra3g1122 2086 Gene3D C2 domain 1143 1252 IPR035892 -
Vra3g1122 2086 SMART helicmild6 1568 1656 IPR001650 -
Vra3g1122 2086 SMART helicmild6 728 820 IPR001650 -
Vra3g1122 2086 Gene3D - 1481 1685 IPR027417 -
Vra3g1122 2086 CDD DEXHc_ASCC3_2 1288 1476 - -
Vra3g1122 2086 Gene3D - 850 940 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1122 Vra-Chr3 11675357 11725432 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1122 K18663 - gmx:100811503 3911.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1122 3 11675357 11725432 Vra3g1122 3 11675357 11725432 ECH