Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1085 ATGGCGTCGAGTATAGGGATGATGGATAGCGCATACTTTGTCGGCAGAAATGAGATTCTCACTTGGATCAACAATCGCCTTCAACTTAACCTCACTCGCATTGAGGAGGCTGCATCTGGTGCTGTACAATGCCAGATGATGGACATGACATATCCAGGGGTTGTTCCAATGCACAAGGTGAATTTTGATGCAAAGACAGAGTATGATATGATTCAGAATTACAAAGTTCTGCAGGATGTGTTCAACAAGCTGAAAATTGAGAAGCATATTGAAGTTGGAAGGCTAGTTAAAGGCCGACCTTTGGACAACTTGGAGTTCCTTCAATGGCTAAAACGCTATTGTGATTCTGTCAATGGAGGCATTATGAATGAGAACTATAATCCCGTTGAGAGGAGGAATAGTAAGGGTGGAAACCGGAATGTCAAGGGTCTAAAGGGATCCAAATCGCTGCAAACAAATGCTATGAATCATTCTGGTTCAGGCGACTCACTCAGGTCCAAGCAATTGAGATCAAGTGGAGGAGCAGATGGTGGTAATGCTTCAGCTGATATTCAGGTTTTGTCCAAGCAGGTTTCTGATCTCACACTGTCAGTGGATCACTTGGAAAAAGAAAGAGACTTTTACTTTGCAAAACTAAGGGATATAGAAATTCTTTGTCAAGCTTCAGAACTGGAGAATGATCCTATGTCTCTGGCAATTAAGAAGATTCTGTATGCGGCTGATGCAAAGGGATCAGCATTAGATGAAGCTCAGGAATACCTTAATGAAGTCATCAATGGTGTTGAAGATGAAGTTGAAGGTGAAGTTGAAGCAGAAACTGAAACCTGA 828 0.4215 MASSIGMMDSAYFVGRNEILTWINNRLQLNLTRIEEAASGAVQCQMMDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVGRLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRNSKGGNRNVKGLKGSKSLQTNAMNHSGSGDSLRSKQLRSSGGADGGNASADIQVLSKQVSDLTLSVDHLEKERDFYFAKLRDIEILCQASELENDPMSLAIKKILYAADAKGSALDEAQEYLNEVINGVEDEVEGEVEAETET* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1085 275 ProSiteProfiles EB1-C terminal (EB1-C) domain profile. 176 246 IPR004953 GO:0008017
Vra3g1085 275 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 1B 1 266 - -
Vra3g1085 275 MobiDBLite consensus disorder prediction 144 175 - -
Vra3g1085 275 Pfam Calponin homology (CH) domain 16 114 IPR001715 GO:0005515
Vra3g1085 275 SUPERFAMILY Calponin-homology domain, CH-domain 5 132 IPR036872 -
Vra3g1085 275 Pfam EB1-like C-terminal motif 201 239 IPR004953 GO:0008017
Vra3g1085 275 Gene3D - 6 135 IPR036872 -
Vra3g1085 275 SUPERFAMILY EB1 dimerisation domain-like 184 242 IPR036133 GO:0008017
Vra3g1085 275 MobiDBLite consensus disorder prediction 125 177 - -
Vra3g1085 275 ProSiteProfiles Calponin homology (CH) domain profile. 13 115 IPR001715 GO:0005515
Vra3g1085 275 Coils Coil 184 204 - -
Vra3g1085 275 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 1 266 IPR027328 GO:0008017
Vra3g1085 275 Gene3D - 182 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1085 Vra-Chr3 11203735 11209327 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1085 K10436 - gmx:100809691 470.7