Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1064 ATGAAGTTCCATCTCTCTCTATTTGTTATAATAGGTATTATTTTTGGAATAAAACTTGAAGGGTGCCAATGCAAGATTGTGCAGTTCATTTTTGGAGACTCCCTCTCAGATGTTGGAAATAACAAGTACCTTTCTAAAAGTCTTGCCCAGGCAAGTTTACCATGGTATGGTATTGATTTCGGCAATGGACTACCTAATGGTAGGTTCTCCAATGGTCGTACGGTTGCAGATATAATAGGTGACAACATGGGACTTCCTAGGCCCCCGGCATTTCTTGATCCATCTTTAACTGAAGATGTTATATTGGAAAATGGGGTGAATTATGCTTCTGGGGGTGGCGGCATATTGAATGAAACTGGCAGTTATTTTATTCAAAGGTTCTCTCTGTACAAACAAATTGAGCTGTTTCAGGGGACACAGGAACTGATCAGAAGCAGAGTTGGAAAAGATAAGGCAGAAAAGTTTTTCCAGGGAGCTCGTTATGTTGTTGCTTTAGGCAGCAATGACTTCATCAACAACTATTTGATGCCTGTTTACAGTGATTCATGGACATACAATGACGAAACATTTGTGAACTACTTGATGGGAACTCTTAGAGAACAATTAAAGCTACTTCATGGGCTTGGAGCCAGGCAGTTGATGGTGTTTGGGCTGGGCCCAATGGGCTGCATTCCCCTTCAAAGAGTGCTTAGTGCATCTGGAGACTGTCAAGACAGAACAAACAAGTTGGCTATCAGGTTTAACCAAGCTGGAAGCAAGTTAATAGATGAGTTACAAAAGCAACTTCCCAATTCAAGCTACAGATTTGGAGATGCATATGATGTTGTTAATGATGTTATTAGCAACCCAAACAAATATGGATTCCAAAACTCAGACTCACCCTGTTGCTCCTTCGGGAACATTCGACCAGCTCTTACGTGTATTCCTGCATCAAAACTGTGCAAAGACAGAAGCAAGTACGTTTTCTGGGATGAGTACCATCCTTCAGATAGAGCCAATGAGCTAATTGCGAATGAGCTGATCAAGAAATTTGGGTTTATGCGTGCTGACCAAACAAATCCTCCTTCACCATCACCTGCTATTGCCCCGTCTTCAAACCATTAA 1104 0.4158 MKFHLSLFVIIGIIFGIKLEGCQCKIVQFIFGDSLSDVGNNKYLSKSLAQASLPWYGIDFGNGLPNGRFSNGRTVADIIGDNMGLPRPPAFLDPSLTEDVILENGVNYASGGGGILNETGSYFIQRFSLYKQIELFQGTQELIRSRVGKDKAEKFFQGARYVVALGSNDFINNYLMPVYSDSWTYNDETFVNYLMGTLREQLKLLHGLGARQLMVFGLGPMGCIPLQRVLSASGDCQDRTNKLAIRFNQAGSKLIDELQKQLPNSSYRFGDAYDVVNDVISNPNKYGFQNSDSPCCSFGNIRPALTCIPASKLCKDRSKYVFWDEYHPSDRANELIANELIKKFGFMRADQTNPPSPSPAIAPSSNH* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1064 367 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 1 357 - -
Vra3g1064 367 MobiDBLite consensus disorder prediction 348 367 - -
Vra3g1064 367 CDD SGNH_plant_lipase_like 29 343 IPR035669 -
Vra3g1064 367 Gene3D SGNH hydrolase 27 344 IPR036514 -
Vra3g1064 367 Pfam GDSL-like Lipase/Acylhydrolase 29 339 IPR001087 GO:0016788
Vra3g1064 367 SUPERFAMILY SGNH hydrolase 29 343 - -
Vra3g1064 367 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1064 Vra-Chr3 10856845 10858897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1064 29 340 Acyl Lipid Metabolism Gene Families AT4G10950 33.651 5.76e-62 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1064 - - gmx:100803991 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1064 3 10856845 10858897 Vra3g1064 3 10856845 10858897 ECH