Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1048 ATGACACACTTGAAATGGTTCAATTCTTTGCTAGGAAGCAGTACGAACCGGTTGGTTCGTGTTTGCATGTCCACGTGCAATCACAAAGCTGAGTTCCCCGTTAGCCTCAAACCACGAAAACCGAACCAAACCCTTAGGAAGCACCTTGAATGCAATAGGCACACCAAAGTGCTTCTCCTCTTCAGATCCTTGTTAAGAAAAGGACCAACTTTCAACGCCATTGACAGCTTTTCTCTGCTTTATGCCCTCAGAGCCTGCAACAACAAACACTCCTCCGCCCAAGGAAAACAACTGCATACCCTCATCGTAAAACTTGGGTACCAAGCCATTGTTCAACTCCAGACATCCCTTTTAAAAGTCTACGCCCAGAGTGGCAACCTGCGTGATGCACACCAAGTGTTCGTTCAAATACCCTCTAAGAATATCATATGCTGGACCTCTTTGATTTCTGCCTATGTTGACAACCACAAGCCTGGGACAGCTTTGCAACTGTTCAGAGAGATGCAAAGGAACAATGTGGAACCTGATCAAGTCACTGTGACCGTTGCCCTCTCTGCCTGTGCTGAGACCGGGGCACTGGAAATGGGTGAATGGATTCATGCCTTGGTCAGGTGTAAAGCAGGGCTGAACAGAGATTTGTGTTTGGATAATGCTCTTATAAACATGTATGCGAAATGTGGGGATGTTGTGACGGCTAGGAAGGTGTTTGATGGAATGAGAAAGAAAGATGTCACAACTTGGACTTCCATGATCGTGGGGCATGCAGTCCATGGGCAAGCAAATGACGCTCTTCAACTTTTTTCAGAAATGAGCACAGGTAGAGACAAGGGAGATGGTGTCATGACCCCAAATGACGTAACGTTCATTGGAGTTTTAATGGCTTGCAGCCATGCAGGCTTGGTTGAGGAAGGGAAGCGGCATTTCAGAAGCATGAGTGAAGTTTATGGTATAGAGCCTAGAGAGGCTCACTTTGGCTGTATGGTGGATCTCTTATGCAGAGGTGGGCATCTGAGAGATGCCCATGACTTCATTATGGAGATGACAATCCCACCAAATGTGATTGTCTGGCGAACCTTGTTGGGAGCTTGCTGTGTTCACGGTGAATTAGATTTAGCTGCCGAAGTTAGGCACAAACTACTCAAGTTGGATCCTGGCTATGTAGGTGACAGCGTTGCTATGTCTAATATTTATGCAAATAAAGGCTTGTGGAACAACAAGATACATGTGAGGAATCAGATAAAACACTCAAGAGCTCCTGGTAGTAGTTCAATTAGAGTTGGTGAATTTCTGATCGTTGATGGCGATCATCCTTTATGA 1317 0.4571 MTHLKWFNSLLGSSTNRLVRVCMSTCNHKAEFPVSLKPRKPNQTLRKHLECNRHTKVLLLFRSLLRKGPTFNAIDSFSLLYALRACNNKHSSAQGKQLHTLIVKLGYQAIVQLQTSLLKVYAQSGNLRDAHQVFVQIPSKNIICWTSLISAYVDNHKPGTALQLFREMQRNNVEPDQVTVTVALSACAETGALEMGEWIHALVRCKAGLNRDLCLDNALINMYAKCGDVVTARKVFDGMRKKDVTTWTSMIVGHAVHGQANDALQLFSEMSTGRDKGDGVMTPNDVTFIGVLMACSHAGLVEEGKRHFRSMSEVYGIEPREAHFGCMVDLLCRGGHLRDAHDFIMEMTIPPNVIVWRTLLGACCVHGELDLAAEVRHKLLKLDPGYVGDSVAMSNIYANKGLWNNKIHVRNQIKHSRAPGSSSIRVGEFLIVDGDHPL* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1048 438 Gene3D Tetratricopeptide repeat domain 209 277 IPR011990 GO:0005515
Vra3g1048 438 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 111 427 - -
Vra3g1048 438 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 42 155 - -
Vra3g1048 438 TIGRFAM PPR: pentatricopeptide repeat domain 217 244 IPR002885 -
Vra3g1048 438 TIGRFAM PPR: pentatricopeptide repeat domain 246 271 IPR002885 -
Vra3g1048 438 TIGRFAM PPR: pentatricopeptide repeat domain 143 176 IPR002885 -
Vra3g1048 438 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Vra3g1048 438 Pfam PPR repeat 324 347 IPR002885 -
Vra3g1048 438 Pfam PPR repeat 286 313 IPR002885 -
Vra3g1048 438 Pfam PPR repeat 246 270 IPR002885 -
Vra3g1048 438 Pfam PPR repeat 355 381 IPR002885 -
Vra3g1048 438 Pfam PPR repeat 217 243 IPR002885 -
Vra3g1048 438 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Vra3g1048 438 Pfam PPR repeat family 140 188 IPR002885 -
Vra3g1048 438 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 42 155 - -
Vra3g1048 438 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 111 427 - -
Vra3g1048 438 Gene3D Tetratricopeptide repeat domain 278 418 IPR011990 GO:0005515
Vra3g1048 438 Gene3D Tetratricopeptide repeat domain 40 208 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1048 Vra-Chr3 10578085 10580408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1048 51 437 Glycoside Hydrolase AT3G49170 36.294 3.32e-75 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1048 - - gmx:102668293 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1048 3 10578085 10580408 Vra3g1048 3 10578085 10580408 ECH