Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1046 ATGCAGATTGGGGTGGGGACCTGCAATGTAAAAATGTCGATGAACCCCTTCTGCAAGATCGCCCTAGAAGAGGCCCTTCACATTAGAGAATCTGCTTTGGCCTTCGAGGTTGTCGTGGTTAGCATTGGACCTTTGAGGGTAGAGAAATTGGGAACAATGAGTCAGGTATTTGACGGGTACGAGCGACAATACTGTGAACTATCAGCGAATCTTTCGCGGCAATGCACTGGGGCTTCCTCTCTTGATGGAGAACAAAAGAAGCAGAAAATTTCTGATATAAAAGCTGGATTAGATGATGCTGAAACATTGATTCGAAAAATGGACCTTGAGGCTAGGAGTTTGCAGCCTAGTATGAAGGCAACTCTTCTTGCCAAGTTAAGGGAATACAAAACTGATTTAACCAATTTGAAGACCGAAGTTAAGAGAGTTACAACATCTAATGTCAGTTTCGCTGCTAGAGATGACTTGTTGGAATCAGGAAGTGCTGATACACTGGCGGTATCAAATGATCAAAAGGGAAGACTTCTGATGTCTACTGAAAGACTTAATCAGTCTACTGATAGAATAAAGGATAGCAGAAAAACAATGCTGGAGACTGAGGAGCTTGGTGTATCTATCCTCCAAGATTTGCATCTACAGCGACAATCCCTACTCCATGCCCATAAGACACTCAATGGGGTGGATGATAACATAAGCAAAAGCAAGAAGATTTTGTCAGCCATGTCAAGAAGGATGAGCAGGAACAGATGGATTGTAGGCTCCTTATTGACAGCTATGGTCATTGCAGTAATAATCATTTTATATTTCAAGCTGACTCATTAG 822 0.4221 MQIGVGTCNVKMSMNPFCKIALEEALHIRESALAFEVVVVSIGPLRVEKLGTMSQVFDGYERQYCELSANLSRQCTGASSLDGEQKKQKISDIKAGLDDAETLIRKMDLEARSLQPSMKATLLAKLREYKTDLTNLKTEVKRVTTSNVSFAARDDLLESGSADTLAVSNDQKGRLLMSTERLNQSTDRIKDSRKTMLETEELGVSILQDLHLQRQSLLHAHKTLNGVDDNISKSKKILSAMSRRMSRNRWIVGSLLTAMVIAVIIILYFKLTH* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1046 273 PANTHER VESICLE TRANSPORT V-SNARE 13-LIKE 53 272 - -
Vra3g1046 273 Gene3D - 53 149 IPR038407 -
Vra3g1046 273 Gene3D HUPs 2 52 IPR014729 -
Vra3g1046 273 Coils Coil 119 146 - -
Vra3g1046 273 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 53 272 - -
Vra3g1046 273 Pfam Snare region anchored in the vesicle membrane C-terminus 180 245 - -
Vra3g1046 273 SUPERFAMILY SNARE fusion complex 182 241 - -
Vra3g1046 273 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 7 49 - -
Vra3g1046 273 Gene3D - 169 249 - -
Vra3g1046 273 Pfam Vesicle transport v-SNARE protein N-terminus 64 142 IPR007705 GO:0006886|GO:0016020
Vra3g1046 273 CDD SNARE_Vti1 179 239 - -
Vra3g1046 273 SUPERFAMILY t-snare proteins 58 144 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1046 Vra-Chr3 10565846 10570355 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1046 K08493 - gmx:100801744 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1046 3 10565846 10570355 Vra3g1046 3 10565846 10570355 ECH