Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1001 ATGACCGTTCAAAGTGCCTTGCACGTCGTCGGTTTATTCTGTTTGCGCCCACTCGTTGTTGACCTTTCAAAATACATTTTCTTCTCTCTCTCTCTCTTTCTCTTTCTCTCCAATCTTTGCATCTTCAATCCCTGCATTTCTCCATCATCGTCACCCTTCTTCTTATGGTCTTGGGTGGTGTCGAGTGTTGGAAGCATGGCATACAAAGTGGACCATGAATACGACTATCTCTTCAAGATCGTACTCATTGGAGACTCTGGTGTCGGAAAATCCAATATCCTTTCCAGGTTTACCCGGAACGAGTTTTGCTTGGAGTCTAAGTCTACCATTGGGGTTGAATTCGCAACCAGAACATTACAGGTGGAGGGGAAGACTGTGAAGGCACAAATATGGGACACAGCTGGTCAAGAGAGGTATCGGGCTATCACGAGTGCATACTACAGAGGAGCAGTAGGTGCCTTGTTAGTGTATGACATAACCAAGAGACAGACATTTGAGAATGTACAAAGGTGGCTTCGTGAACTGAGGGACCATGCAGACTCCAACATCGTTATTATGATGGCTGGAAACAAGTCTGACCTCAACCATCTCAGAGCAGTCTCTACCGATGATGCTCAAGGTTTGGCTGAGAGAGAGGGTTTGTCATTCCTAGAGACTTCTGCATTGGAGGCCTTCAATGTTGAGAAAGCATTTCAAACCATTTTGTTTGATATTTACCAAATTATGAGTAAAAAGGCACTCGCTGCACAGGAAGCAGCTTCCACTGCTAACGTTCCTCATGGGACTACCATAAATGTCTCAAATATGTCTGCTAGTGTTGAGAAGAAATCTTGTTGTTCCAATTAA 846 0.4433 MTVQSALHVVGLFCLRPLVVDLSKYIFFSLSLFLFLSNLCIFNPCISPSSSPFFLWSWVVSSVGSMAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSTDDAQGLAEREGLSFLETSALEAFNVEKAFQTILFDIYQIMSKKALAAQEAASTANVPHGTTINVSNMSASVEKKSCCSN* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1001 281 PRINTS Transforming protein P21 ras signature 78 99 - -
Vra3g1001 281 PRINTS Transforming protein P21 ras signature 101 117 - -
Vra3g1001 281 PRINTS Transforming protein P21 ras signature 119 141 - -
Vra3g1001 281 PRINTS Transforming protein P21 ras signature 181 194 - -
Vra3g1001 281 PRINTS Transforming protein P21 ras signature 216 238 - -
Vra3g1001 281 SMART rab_sub_5 78 241 - -
Vra3g1001 281 ProSiteProfiles small GTPase Ras family profile. 73 281 IPR001806 GO:0003924|GO:0005525
Vra3g1001 281 SMART ran_sub_2 83 278 - -
Vra3g1001 281 SMART arf_sub_2 66 245 - -
Vra3g1001 281 ProSiteProfiles small GTPase Rab1 family profile. 73 279 - -
Vra3g1001 281 SMART rho_sub_3 80 237 IPR001806 GO:0003924|GO:0005525
Vra3g1001 281 ProSiteProfiles small GTPase Rho family profile. 71 239 - -
Vra3g1001 281 TIGRFAM small_GTP: small GTP-binding protein domain 76 234 IPR005225 GO:0005525
Vra3g1001 281 PANTHER - 66 281 - -
Vra3g1001 281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 244 IPR027417 -
Vra3g1001 281 SMART ras_sub_4 75 241 - -
Vra3g1001 281 CDD Rab11_like 75 239 - -
Vra3g1001 281 Pfam Ras family 79 239 IPR001806 GO:0003924|GO:0005525
Vra3g1001 281 PANTHER RAS-RELATED PROTEIN RAB11C-LIKE 66 281 - -
Vra3g1001 281 Gene3D - 70 279 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1001 Vra-Chr3 10058115 10059314 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1001 K07904 - gmx:100799521 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1001 3 10058115 10059314 Vra6g0653 6 6065361 6067314 PCT