Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1000 ATGGAGAAGGGAAAGGAAAGTAACGAAAAATGGGTGCATGATTCTTCTGTGGACTATAAAGGCAGAGTTCCTCTCCGTGCTTCCACTGGTGTATGGAAAGCCTCCCTCTTTGTCCTCGCTATTGAATTTAGTGAAAGATTGAGCTACTTTGGAATAGCTAATAATCTCATCTCCTACCTTACAAAAGTGATGCATGAAGACCTCAAAACTGCAGCCAAGAATGTAAACTACTGGTCAGGAACCACAACTCTAATGCCTCTGATTGGGGGATTTATTGCTGATGCTTACACCGGTCGATTTTACATGGTTCTGTTCTCCGCTTTTGTATACCTCATGGGATTAAGCCTGTTGACTATGTCTCAATTCATCCCAAGTATAAAGGCTTGCAACACTAGTATATGCCAACAACCAAGGAAGGTTCATGAAGTGATTTTCTTCCTTTCCCTTTACTGTATCTCCTTAGGCACAGGAGGATACAAACCATGCTTGGAAAGCTTTGGAGCTGACCAATTTGATGATGATCACTTGGAAGAAAGGAAGCAGAAGATGTCTTTCTTCAACTGGTGGTTCTTTGCACTGTGCTTTGCATTGCTTCTCAGTGCAACAGTGATTGTTTATGTTCAAGACTTTGTCAGCTGGGGAGTTGCTTGCCTTGCCATTGCTATTATTATGGTTATCACTATCATAGCTTTCTGTGTGGGAAAATCATTTTACAGGTACAGAAGGCCAGAAGGAAACCCTTTAACACCAATTTTACAAGTCTTAATTGCAGCAGTAAGGAAAAGAAATTTGACTTTCCCTTCAAATCCTGCTTTATTGTATGAGGTCCCAGAGTCAGAAAGGTCCCAAGGAAGGCTTCTAAAACACACTAGCAGGCTCAGGTTTCTTGACAAGGCTGCAATAATTGAAGAGAAAAATGGTGAGCGAAAGGAGAGTCCATGGAGATTAGTAACAGTGACAAGAGTCGAAGAAACAAAACTGGTTCTAAATTTAGTTCCCATATGGTTAACATCATTAACAGTTGGAGTATGTGTGGCTCAAGGCACAACATTGTTTGTGAAACAAGCAGCTGTTACGAACCTAAGGATAAGTAAGAACTTCAAAATCCCAGCAGCTTCCATGGCCTCTGTTTCAGCGGTTGGCACCATAATTGCTGTCCCAATATATGATAGGATTATGGTTCCAATTCTGAGGAAAATGACTGGTAACGAAAGAGGCATCAGCATCCTTAAGAGGATCGGCATCGGCATGACATCATCTGTTATGCTCATGATTGTTGCTGCCTTAGTAGAAGCAAAGAGACTAAGAATGTCTGCTAACCACCATACAATGAGCGTTTTTTGGTTGATACCCCAATACTTAATCCTTGGGATTGGAGATTCGTTTTCCCTAGTTGGTTTGCAAGAGTACTTCTATGAGGAAGTTCCTGAGTCAATGAGAAGCTTAGGAATGGCTTTGTATCTGAGTGTGCTTGGAGTAGGATTCTTCTTAAGCAGTTTTCTAATAATCATGGTGGACCATCTGACAGGGAAGAGCGGTAAAAGTTGGATAGGGAAGGACATAAATTCAAGTCGTCTAGATAGGTTTTATTGGATGTTGGCTGTCATAAACGCTTTGGTTTTGTGTTTGTTCATCTTGGTCACAAAAAGGTACACTTACAAGGCTGTACAGAGGAGAGGCATGGACACCGATTGTCATAAGATTGATGAGGTGGAGATGGTGAGTTGA 1728 0.4149 MEKGKESNEKWVHDSSVDYKGRVPLRASTGVWKASLFVLAIEFSERLSYFGIANNLISYLTKVMHEDLKTAAKNVNYWSGTTTLMPLIGGFIADAYTGRFYMVLFSAFVYLMGLSLLTMSQFIPSIKACNTSICQQPRKVHEVIFFLSLYCISLGTGGYKPCLESFGADQFDDDHLEERKQKMSFFNWWFFALCFALLLSATVIVYVQDFVSWGVACLAIAIIMVITIIAFCVGKSFYRYRRPEGNPLTPILQVLIAAVRKRNLTFPSNPALLYEVPESERSQGRLLKHTSRLRFLDKAAIIEEKNGERKESPWRLVTVTRVEETKLVLNLVPIWLTSLTVGVCVAQGTTLFVKQAAVTNLRISKNFKIPAASMASVSAVGTIIAVPIYDRIMVPILRKMTGNERGISILKRIGIGMTSSVMLMIVAALVEAKRLRMSANHHTMSVFWLIPQYLILGIGDSFSLVGLQEYFYEEVPESMRSLGMALYLSVLGVGFFLSSFLIIMVDHLTGKSGKSWIGKDINSSRLDRFYWMLAVINALVLCLFILVTKRYTYKAVQRRGMDTDCHKIDEVEMVS* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1000 575 Pfam POT family 102 511 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vra3g1000 575 Gene3D MFS general substrate transporter like domains 3 560 IPR036259 -
Vra3g1000 575 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 18 559 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vra3g1000 575 SUPERFAMILY MFS general substrate transporter 28 551 IPR036259 -
Vra3g1000 575 PANTHER OS03G0204700 PROTEIN 18 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1000 Vra-Chr3 10050183 10055952 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1000 2 557 Organic Solute Cotransporters AT3G53960 56.537 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1000 - - gmx:102660397 957.207