Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0990 ATGGCGGAATTGGAGGAGGACCGGATGGGGGATTTCAAGCCCTTCTCGGAGGGCTCTTCGTGTTCGCGCTCGATCAGCGAAACGGTGAATGGGTCGCACCAATTCACGATAAAGGGGTACTCTCTCGCAAAAGGGATGGGTGCTGGGAAGTACATCATGAGCGACACATTTAGCGTAGGTGGTTACGATTGGGCAATTTACTTCTACCCTGATGGGAAGAACCCTGAGGACAATTCCATGTACGTATCGGTCTTCATAGCTCTCGCTAGCGACGGAACCGACGTTAGGGCTCTGTTCAAGTTGACGCTGGTGGATCAGAGTGAGAAGGGGAACGATAAGGTTCATAGCCATTTCGATAGGCCCCTTGATGGTGGACCGTACACCTTGAAGTATAGAGGCAGCATGTGGGGTTACAAGCGTTTCTTCAGAAGAACTCTACTGGAAACTTCGGAGTATCTAAAAGATGATTGCCTTGTCATGCATTGCACTGTTGGTGTTGTCAAAACTCGTTTTGAGGGATCTAAACAGGGTGTTATTGTGCCACAGTCAGACATGGGCCGAAATTTTAAGGACTTGCTGAACTCAGAGGTTTGTTGCGACATAGTTTTCAAGGTTAAAAGCGAGAGCTTCAAAGCTCATAAGTTAATACTTGCGGCACGATCTCCTGTGTTTAGAGCACAATTTTTTGGACTTGTTGGGGATCCTAGCTTAGAGGAAGTAGTGGTAGAGGATATTGAGCCTTTTATCTTCAAGGCAATGCTTCTCTTCATTTATTCCGACAAACTTCCTGACATCTATGAAGTAATGGACTCAATGAATGTCTGCTCATATGCTGTCATGGTGCAGCATCTCCTGGCTGCTGCTGATCTGTATAATCTTGATCGGCTCAAACTTCTTTGTGAATCAAAATTGTGTGAAGAAATCAATACTGACAATGTAGCCACCACACTTGCCCTGGCAGAGCAACACCACTGTCCACAGCTGAAGGCAATCTGTTTGAAATTTATTGCAAATCCAGCAAATTTAGGAGATGGAGCATTTCCAGAAGCTGTGATGCAGTCGGAAGCTTTTGTGCATTTGAAAGAGAGCTGCCCCGCAATGTTGTTGGAACTTCTGGAGACGTTTGCCTCAGTGGACGATAACTCAAGCCTGACATTGAGCAGAAAGAGAAGTGGCAGTAGCATATATGGTCAAGATTTGGCAGACGGGGCGGCTGCTGAATCAGTTAATCCAAGTGGCAGGCGATTAAGGAGGCGAACATAA 1263 0.464 MAELEEDRMGDFKPFSEGSSCSRSISETVNGSHQFTIKGYSLAKGMGAGKYIMSDTFSVGGYDWAIYFYPDGKNPEDNSMYVSVFIALASDGTDVRALFKLTLVDQSEKGNDKVHSHFDRPLDGGPYTLKYRGSMWGYKRFFRRTLLETSEYLKDDCLVMHCTVGVVKTRFEGSKQGVIVPQSDMGRNFKDLLNSEVCCDIVFKVKSESFKAHKLILAARSPVFRAQFFGLVGDPSLEEVVVEDIEPFIFKAMLLFIYSDKLPDIYEVMDSMNVCSYAVMVQHLLAAADLYNLDRLKLLCESKLCEEINTDNVATTLALAEQHHCPQLKAICLKFIANPANLGDGAFPEAVMQSEAFVHLKESCPAMLLELLETFASVDDNSSLTLSRKRSGSSIYGQDLADGAAAESVNPSGRRLRRRT* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0990 420 Pfam BTB/POZ domain 189 306 IPR000210 GO:0005515
Vra3g0990 420 ProSiteProfiles BTB domain profile. 199 262 IPR000210 GO:0005515
Vra3g0990 420 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 3 18 385 - -
Vra3g0990 420 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 18 385 IPR045005 GO:0016567
Vra3g0990 420 Gene3D Potassium Channel Kv1.1; Chain A 175 303 IPR011333 -
Vra3g0990 420 SUPERFAMILY POZ domain 181 306 IPR011333 -
Vra3g0990 420 CDD BTB_POZ_BPM_plant 185 305 - -
Vra3g0990 420 CDD BACK_AtBPM-like 305 374 IPR034090 -
Vra3g0990 420 SUPERFAMILY TRAF domain-like 27 166 - -
Vra3g0990 420 MobiDBLite consensus disorder prediction 1 23 - -
Vra3g0990 420 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 29 169 IPR008974 GO:0005515
Vra3g0990 420 SMART math_3 35 147 IPR002083 GO:0005515
Vra3g0990 420 CDD MATH 31 164 IPR002083 GO:0005515
Vra3g0990 420 ProSiteProfiles MATH/TRAF domain profile. 30 164 IPR002083 GO:0005515
Vra3g0990 420 Gene3D - 307 394 - -
Vra3g0990 420 SMART BTB_4 199 308 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0990 Vra-Chr3 9963185 9970017 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0990 K10523 - gmx:100786636 771.155