Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0984 ATGACAGAGCCAGAAATAAGCAGAAGTAAAAGAGGAGGAAGATGGTCTCTCAGAGGAATGACGGCTCTTGTCACCGGCGGCACTCGCGGGATCGGACACGCCATAGTGAGTGACTTGGCCGCGTTTGGCGCGGCTGTGCATACTTGTTCGAGGACCCAAACTGAGCTCGACAAGTGCTTAGAAGAGTGGCAGAGTGAGGGGATTAAGGTTACTGGATCTGTTTGTGACGTGTCCTCGCCTCTTCAGAGAAAGAAGCTTATTCAGGAAGTAGCATCCATCTTGAATGGCAAGCTTAACATCTATGTAAACAACGTTGGAACAACCATTAGAAAGCCAACAATTGAGTACAGTGCTGAAGAATACTCACAGCTGATGACAGTTAATTTAGACTCCTCATTCCATCTGTGCCAACTTGCATATCCTCTTCTGAAAAAATCTGGAAATGGAAGCATTGTGTTCATTTCATCTGTTGCTGGCGTGGTCAGCTTGGGTACTGGAGCTGTCTATGCGGCAAGTAAAGCTGCAATAAATCAACTTACAAAAAATCTGGCATGTGAATGGGCAAAAGACAACATAAGGAGCAACTGTGTTGTACCATGGGCTACTAGAACCCCGCTTGTTGAACATTTGTTGAAAGATGAAAAGTTTGTGGATGAAATAATGTCCCGTACACCAATCAAGCGTATAGCAGAAGCAGAAGAAGTATCATCTTTGGTGACTTTTCTGTGCTTGCCTGCTGCTTCTTACATCACTGGACAGGTGATCTGTGTTGATGGAGGATTAACAGTGAATGGATTTCAACCCAGCATCAGAATCACCTGA 822 0.4501 MTEPEISRSKRGGRWSLRGMTALVTGGTRGIGHAIVSDLAAFGAAVHTCSRTQTELDKCLEEWQSEGIKVTGSVCDVSSPLQRKKLIQEVASILNGKLNIYVNNVGTTIRKPTIEYSAEEYSQLMTVNLDSSFHLCQLAYPLLKKSGNGSIVFISSVAGVVSLGTGAVYAASKAAINQLTKNLACEWAKDNIRSNCVVPWATRTPLVEHLLKDEKFVDEIMSRTPIKRIAEAEEVSSLVTFLCLPAASYITGQVICVDGGLTVNGFQPSIRIT* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0984 273 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 156 184 IPR020904 GO:0016491
Vra3g0984 273 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 5 270 - -
Vra3g0984 273 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 19 264 IPR036291 -
Vra3g0984 273 PRINTS Glucose/ribitol dehydrogenase family signature 21 38 IPR002347 -
Vra3g0984 273 PRINTS Glucose/ribitol dehydrogenase family signature 96 107 IPR002347 -
Vra3g0984 273 PRINTS Glucose/ribitol dehydrogenase family signature 143 159 IPR002347 -
Vra3g0984 273 PRINTS Glucose/ribitol dehydrogenase family signature 169 188 IPR002347 -
Vra3g0984 273 PRINTS Glucose/ribitol dehydrogenase family signature 190 207 IPR002347 -
Vra3g0984 273 PRINTS Glucose/ribitol dehydrogenase family signature 225 245 IPR002347 -
Vra3g0984 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 96 107 IPR002347 -
Vra3g0984 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 IPR002347 -
Vra3g0984 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 IPR002347 -
Vra3g0984 273 Pfam Enoyl-(Acyl carrier protein) reductase 28 262 - -
Vra3g0984 273 Gene3D - 4 266 - -
Vra3g0984 273 PANTHER TROPINONE REDUCTASE 5 270 IPR045000 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0984 Vra-Chr3 9896440 9897829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0984 14 268 Miscellaneous Gene Families AT2G29290 63.035 1.35e-120 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0984 K08081 - gmx:100800947 483.411