Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0970 ATGCCTTCTTCCTCACATTACTTCCTTTTCTTCTGCATTCTAGTCTTCATCTCCGACACCGATGGAACAGAACTCATAGTGGCGAACAACTGCAAAGAAAGTGTATGGCCCGCAATTCTCGGCAATGGAGGACACCCTTCACCAAAACATGGCGGGTTTTATCTTGGAAGCGGCGAAGAGGTTGTTGTGCATGTCCCTGAGGGTTGGTCAGGGAGAATCTGGGGCAGACAAGGGTGTTACTTGGACCAAGAAACAGGCAAAGGTTATTGCCAAACAGGAGATTGTGGAGGGCTATTGCAATGCAATGGTATCGGTGGAGTCCCTCCTGCAACCCTAGTAGAAATGACCCTTGGAACCTCAAAATCAGCTTTGCATTTCTATGATGTTAGTTTGGTTGATGGGTTTAACCTTCCTGTGTCAATGAAGCCAGTGAGTGGTAGTGGTGCAGGTTGTGGTGTTGCTGGCTGTGAAGCTAACTTGAACGTTTATTGCCCTTCAGCTTTGGTTGTGGAGAGGAATGGGAAGGTTGTGGGATGCAAGAGTGCTTGTTTGGCAGCAAAGTCAGATAGGTATTGCTGCACTGGTGAGTTTGCTGGAAGATGCAAGCCAACTGTGTTTGCTCGTCTCTTCAAGACCGTTTGCCCTAATGCTTATAGCTATGCTTTTGATGATTCAGTCCTCAAGACTTGTGTCGCACCTCGCTATGTCATTACATTTTGCCCTCCACATTGA 732 0.4727 MPSSSHYFLFFCILVFISDTDGTELIVANNCKESVWPAILGNGGHPSPKHGGFYLGSGEEVVVHVPEGWSGRIWGRQGCYLDQETGKGYCQTGDCGGLLQCNGIGGVPPATLVEMTLGTSKSALHFYDVSLVDGFNLPVSMKPVSGSGAGCGVAGCEANLNVYCPSALVVERNGKVVGCKSACLAAKSDRYCCTGEFAGRCKPTVFARLFKTVCPNAYSYAFDDSVLKTCVAPRYVITFCPPH* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0970 243 ProSitePatterns Thaumatin family signature. 86 101 IPR017949 -
Vra3g0970 243 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Vra3g0970 243 PRINTS Pathogenesis-related protein signature 72 83 IPR001938 -
Vra3g0970 243 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Vra3g0970 243 PRINTS Pathogenesis-related protein signature 231 240 IPR001938 -
Vra3g0970 243 PANTHER OS03G0233200 PROTEIN 3 243 IPR001938 -
Vra3g0970 243 SUPERFAMILY Osmotin, thaumatin-like protein 24 242 IPR037176 -
Vra3g0970 243 Pfam Thaumatin family 29 241 IPR001938 -
Vra3g0970 243 CDD TLP-PA 24 240 - -
Vra3g0970 243 PIRSF PR5 2 243 IPR001938 -
Vra3g0970 243 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 3 243 - -
Vra3g0970 243 SMART tha2 25 241 IPR001938 -
Vra3g0970 243 Gene3D Thaumatin 24 241 IPR037176 -
Vra3g0970 243 ProSiteProfiles Thaumatin family profile. 25 243 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0970 Vra-Chr3 9792230 9793144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0970 16 241 Receptor kinase-like Gene Family AT5G38280 40.851 1.50e-48 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0970 - - gsj:114381056 443.736