Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0961 ATGGAGTCTCCTCAAACCAAGAAATCGGGTCTGAACCTCCCAGCTGGGATGTCCGGAACCTCACTCCGCCTTGACACTTTTGCTTCATCGCCATCTTCTTCTCGTTCCATCGCCAGCCTCACTTCTCCTTCTTCTCTCCGTTCCATCTCTAACCTCACTTCACCTTCGAAATCAAGCACATGCAGCGACAGGTTCATCCCCTGCCGCTCCTCCTCACGCCTCCACACGTTCGGCCTCGTTGACAGGCCATCGCCGGTGAAGGAAGGGAGTAACGAGGCGTATTCCAGGTTGTTGAAACGCGAACTCTTTGGATCTGACTTTGCTTCCCCTTCTTCTCTTTCTTCTCCTTCTGCAGGTGCTCCTCCCTCGCCGATCAGCCCCAGTAAAAACATGCTCCGTTTCAAGACCGATCACTCCACTACGCCATCCTCCCCTTACTCTCCTTCCATCTTGGGGCAGCAGAGTACCTTCGCTTCTGATTCCTCTACCCCGCCTCCCAAACCTCCCAGGAAAGTCCCCAAGACACCCCACAAGGTTCTGGATGCTCCATCACTTCAGGATGACTTTTACTTGAATCTAGTGGACTGGTCCTCACAGAATGTTCTTGCTGTGGGACTAGGCACTTGTGTTTATCTTTGGAGCGCTTCAAACAGTAAAGTGACTAAGCTATGTGACTTGGGTCCTTATGATGGTGTATGTTCTGTCCAGTGGACCCGGGAGGGCTCTTTTATATCAATTGGTACAAATCTTGGCCAAGTTCAGGTTTGGGATGGAACTCAGTGTAAGAAAGTCAGAACTATGGGAGGACATCAGACAAGGACTGGTGTGTTGGCATGGAACTCTCGCATTCTGGCCTCGGGGAGCAGGGATAGGAACATACTTCAGCATGACATGAGGGTTTCAGGTGACTTTATTAGCAAGCTCGTTGGCCACAAGTCAGAGGTATGTGGATTGAAATGGTCCTGTGATGACAGGGAACTTGCCTCTGGTGGTAATGATAATCAGCTCCTGGTATGGAATCAACACTCTCAGCAACCAGCTCTGAGACTCACAGAACATACTGCTGCAGTTAAGGCCATTGCTTGGTCACCCCACCAAAGCGGTCTCCTTGTGTCTGGCGGTGGAACTGCAGATAGGTGCATTCGTTTTTGGAACACTACAAATGGCCATCAATTAAACAGTGTTGACACTGGGAGCCAGGTCTGCAACCTTGTTTGGAGTAAAAATGTGAATGAGCTAGTAAGTACACACGGATACTCCCAAAATCAGATTATGGTGTGGAAGTATCCATCATTGGCAAAGGTTGCAACTCTAACTGGCCATAGCATGAGAGTGCTGTACCTTGCAATGTCACCTGATGGTCAGACAATAGTAACTGGAGCAGGGGATGAGACTCTCCGGTTCTGGAATATTTTCCCATCAATGAAAGCACCTGCTCCTGTTAAAGATACAGGCCTTTGGTCACTGGGGCGTACTCAAATTCGATGA 1488 0.4953 MESPQTKKSGLNLPAGMSGTSLRLDTFASSPSSSRSIASLTSPSSLRSISNLTSPSKSSTCSDRFIPCRSSSRLHTFGLVDRPSPVKEGSNEAYSRLLKRELFGSDFASPSSLSSPSAGAPPSPISPSKNMLRFKTDHSTTPSSPYSPSILGQQSTFASDSSTPPPKPPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWSASNSKVTKLCDLGPYDGVCSVQWTREGSFISIGTNLGQVQVWDGTQCKKVRTMGGHQTRTGVLAWNSRILASGSRDRNILQHDMRVSGDFISKLVGHKSEVCGLKWSCDDRELASGGNDNQLLVWNQHSQQPALRLTEHTAAVKAIAWSPHQSGLLVSGGGTADRCIRFWNTTNGHQLNSVDTGSQVCNLVWSKNVNELVSTHGYSQNQIMVWKYPSLAKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNIFPSMKAPAPVKDTGLWSLGRTQIR* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0961 495 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 9 495 IPR033010 GO:0010997|GO:0097027|GO:1904668
Vra3g0961 495 MobiDBLite consensus disorder prediction 110 179 - -
Vra3g0961 495 Pfam Eukaryotic translation initiation factor eIF2A 333 464 IPR013979 -
Vra3g0961 495 MobiDBLite consensus disorder prediction 1 16 - -
Vra3g0961 495 SUPERFAMILY WD40 repeat-like 148 471 IPR036322 GO:0005515
Vra3g0961 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 438 471 IPR001680 GO:0005515
Vra3g0961 495 MobiDBLite consensus disorder prediction 1 65 - -
Vra3g0961 495 ProSitePatterns Trp-Asp (WD) repeats signature. 457 471 IPR019775 -
Vra3g0961 495 MobiDBLite consensus disorder prediction 129 161 - -
Vra3g0961 495 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 308 340 - -
Vra3g0961 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 349 IPR001680 GO:0005515
Vra3g0961 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 350 394 IPR001680 GO:0005515
Vra3g0961 495 PANTHER PROTEIN FIZZY-RELATED 3 9 495 - -
Vra3g0961 495 MobiDBLite consensus disorder prediction 22 65 - -
Vra3g0961 495 Gene3D - 129 472 IPR015943 GO:0005515
Vra3g0961 495 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 438 471 - -
Vra3g0961 495 SMART WD40_4 431 470 IPR001680 GO:0005515
Vra3g0961 495 SMART WD40_4 301 340 IPR001680 GO:0005515
Vra3g0961 495 SMART WD40_4 260 297 IPR001680 GO:0005515
Vra3g0961 495 SMART WD40_4 173 214 IPR001680 GO:0005515
Vra3g0961 495 SMART WD40_4 343 385 IPR001680 GO:0005515
Vra3g0961 495 SMART WD40_4 217 257 IPR001680 GO:0005515
Vra3g0961 495 ProSitePatterns Trp-Asp (WD) repeats signature. 372 386 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0961 Vra-Chr3 9646852 9650598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0961 305 471 Miscellaneous Gene Families AT5G08390 22.024 3.65e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0961 K03364 - gmx:547741 879.396