Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0960 ATGGTGTCAAAGAAGAGGGTAGATTATGGATTTAATGGCTTTCAAGTTCCTGTTATACCTAAAGCTCCTAGATCTGTAAGGAGGAGGGGTCCTTTCAACAAAGCAGCAGAGGATGGTCGAGTTTGTGCTATTGAACTACTGGCATCTTTAGCCGGTCAATTGCTGCAGGAGAGTGAAAGTTCTGCTTCCAGCAACGCATCTGAAGGAAATAATCAACCTGCCTTTAGCCAAGGTGTCATTGAGCAAGACAGACAGGATGAAATTAAACCATTAAAAAAGGAGGAAATTCACCAGGGAAGTTGTGCTGAGAGCACTGTTAAGACTGAGGTAGGGTCACAAAACAGTAGCCAGAAACCTCCTCCACATTCCAAGACTGATTTTTCACAAGGGCACGTTTCGGTTAATAATGGTTCTGACATTTGTGAGAAAGTTGAAGGTGATGTGAAGTCTGAAATTTTCAAATGGGATAATAAATTTGGGAATTATTCTAATAGATTAGTAAAAACATCTGAAAAGTTTAGGGAGTCTAGTGATGGTAAGATGAAGAATGGATTTAAACAGGAACAAGAAGCTGGCAGTTCATGCTTTAGGGGATCAAATTTGGCCGATAAATGTAGTTTGAAAGACCACTTAGAATTGTATGTATCTCCTACACTAATTAACTCAAAAAGTAATATTAAATCTCCCTTTCATAGGAAATCTTCTCCCAGTGCTTCCTTTTCCAGGCGTGGGAATGTTGTAAAATTAGGTTCTAGAGATGATGACGAAAACTTTTTAAGGTGCAAAAGAGTTTGCACAAAGTCAAAGGCCTTTAGGTCTCCAAGACGCATTGCGCACAGAAGAATCAGGAATTTGATGTCTTCTAAATACTGGAAGACTGCTCCAAAGCTGAAAGACTGTGAACTTTCTAGATCTGATTTAGGAGTACCTCATTATCATAAGAGGAAGACTTGCTATGGTTTTGAAAGATTTCAGAACAACACTTTTATTAAGAAGAGGAAAATCGTTGATCGGGTTTCAGGAGTAACTTCTGATGGAGGAGGATTCAGCAGTGAGAGTGTGTCCAATTCACCTCAGAAAGGGACGGATGGAGACAAGCCTAGCTCATCTGCAAAACTGCATGTAGCTAAGGCTAAGGATTCCCATGTAAAGTTTAGCATTAAGTCGATAAGGATACCAGAGCTTTATATTGAGGTTCCCGAAACTGCAACTGTTGGTTCGCTAAAGAGGACAATCATGGAGGCGGTGATGGCTATACTTGGAGGGGGTGCACATGTTGGTGTTCTTCATCATGGGAAAAAAGTCAGAGATGACAGTAGGACACTTGTGCAGACGGGTATATCTTGCAACGAAAATTTGGATACCCTGAGTTTCATGTTGGAGCCGGTTTCTCTTCAAGCTTCTCCAACCATTCGTGGTGCTGATCCCTCTTCTCAATGTGAAACATCCCAGCTCACTAGGCCCATAGAAACTCCTGCCTTAGATTCAGAGATTACTGATACCTTGCATGACTCACCCTTGCTGACATATCCGAGCAACCTAATTGAAAGTAACCACGAGACTACTTCTTCACTCGCCGACACAACAGTTGACAAAATAACACCTGATTGCAGAGCGCTGGTTCCCGTTCCAGCTAGCATGGAAGCATTAGCTGTGGTTCCTGTGAGTCAGAAAACTAAGCGCTCTGAGTTTGTACAGCGTCGAACCAGGAGACCGTTCTCTGTGACTGAGGTAGAAGCACTTGTTCACGCAGTTGAGGAACTTGGAACTGGGAGGTGGCGTGATGTTAAGCTGCGAGCTTTTGAGAATGCAGACCATAGGACATATGTGGACCTAAAGGATAAATGGAAAACACTGGTGCACACTGCAACAATCTCCCCTCAACAAAGGAGAGGAGAACCAGTGCCTCAGGAGCTCTTGGACAGAGTTTTGGCTGCTCATGCATTCTGGTCTCAGCACCAAGCCAAGCAGCATGGGAAACATCAAGCTGGATCTGGAACCTTGAAGATTACAGAAGCCTCAGCTGAAAGACCGTGTGTTTGTTGA 2046 0.4316 MVSKKRVDYGFNGFQVPVIPKAPRSVRRRGPFNKAAEDGRVCAIELLASLAGQLLQESESSASSNASEGNNQPAFSQGVIEQDRQDEIKPLKKEEIHQGSCAESTVKTEVGSQNSSQKPPPHSKTDFSQGHVSVNNGSDICEKVEGDVKSEIFKWDNKFGNYSNRLVKTSEKFRESSDGKMKNGFKQEQEAGSSCFRGSNLADKCSLKDHLELYVSPTLINSKSNIKSPFHRKSSPSASFSRRGNVVKLGSRDDDENFLRCKRVCTKSKAFRSPRRIAHRRIRNLMSSKYWKTAPKLKDCELSRSDLGVPHYHKRKTCYGFERFQNNTFIKKRKIVDRVSGVTSDGGGFSSESVSNSPQKGTDGDKPSSSAKLHVAKAKDSHVKFSIKSIRIPELYIEVPETATVGSLKRTIMEAVMAILGGGAHVGVLHHGKKVRDDSRTLVQTGISCNENLDTLSFMLEPVSLQASPTIRGADPSSQCETSQLTRPIETPALDSEITDTLHDSPLLTYPSNLIESNHETTSSLADTTVDKITPDCRALVPVPASMEALAVVPVSQKTKRSEFVQRRTRRPFSVTEVEALVHAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTATISPQQRRGEPVPQELLDRVLAAHAFWSQHQAKQHGKHQAGSGTLKITEASAERPCVC* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0960 681 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 566 624 IPR017930 -
Vra3g0960 681 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 673 IPR031105 -
Vra3g0960 681 SUPERFAMILY Ubiquitin-like 379 460 IPR029071 -
Vra3g0960 681 ProSiteProfiles Myb-like domain profile. 565 620 IPR001005 -
Vra3g0960 681 MobiDBLite consensus disorder prediction 344 366 - -
Vra3g0960 681 PANTHER TELOMERE-BINDING PROTEIN, PUTATIVE-RELATED 1 673 - -
Vra3g0960 681 MobiDBLite consensus disorder prediction 58 79 - -
Vra3g0960 681 MobiDBLite consensus disorder prediction 94 132 - -
Vra3g0960 681 MobiDBLite consensus disorder prediction 58 82 - -
Vra3g0960 681 MobiDBLite consensus disorder prediction 343 373 - -
Vra3g0960 681 SMART sant 569 622 IPR001005 -
Vra3g0960 681 MobiDBLite consensus disorder prediction 101 132 - -
Vra3g0960 681 Gene3D - 558 662 - -
Vra3g0960 681 SUPERFAMILY Homeodomain-like 571 652 IPR009057 -
Vra3g0960 681 CDD SANT_TRF 571 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0960 Vra-Chr3 9640773 9645766 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0960 - - gmx:100795471 1119.38