Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0952 ATGGGAGATCAAGAAGAGAGATTAGAGTCGGAGGGTTTGGATTCCGGCGCCGTCGTCAAGACCGATGACTTGTGCATGGAAATTGATCCGCCATTTCAGGAAAACATCGCTACCGCCGAGGACTGGCGGAAAGCGCTTAACAGAGTTGTCCCCGCAGTCGTCGTCCTTCGCACCACCGCCACTCGCTCCTTCGACACCGAGTCCGCCGCCGCCAGCTACGCCACCGGCTTCATCGTGGACAAGAGCCGCGGCATCATTCTCACTAATCGCCACGTGGTCAAGCCAGGTCCTGTGGTTGCCGAAGCCATGTTTCTGAATCGCGAAGAGGTTCCAGTGCATCCGATTTACAGAGATCCGGTACATGATTTTGGGTTCTTTCGTTATGATCCCGGTGCTATACAATTTTTAAACTATGAAGAGATACCTCTTGCTCCTGAAGCTGCTTGTGTTGGACTAGAAATCAGAGTCGTTGGTAATGATAGTGGCGAGAAGGTTTCCATTTTGGCTGGTACTCTTGCTCGTTTGGATAGGGATGCTCCTCATTATAAGAAGGATGGGTATAATGACTTCAACACATTCTATATGCAAGCAGCTTCTGGGACCAAAGGAGGGTCAAGTGGTTCCCCAGTTATAGATTGGCAAGGCAGGGCAGTTGCTCTGAATGCTGGGAGCAAGTCATCAAGTGCATCAGCTTTCTTTCTACCTCTAGAACGAGTTGTGAGGGCCTTAAGGTTTATTCAAAAGGGAAGTGAAACTTATGTTGATAAATGGCAGGCAGTTTCTATACCTCGTGGTACGCTTCAGGTCACATTTCTCCATAAAGGGTTTGACGAGACTCGTCGCCTTGGCCTCAAAACTGAGACGGAGCAGATAGTACGCCAGGCTTCTCCAGCTGGTGAAACTGGAATGCTTGTTGTGGAATCTGTGGTGCCAGGTGGTCCAGGTTATAAACATTTGGAACCAGGTGATGTACTTGTGCGTGTAAATGGAGAAGTCATTACTCAGTTCCTGAAACTGGAGACTCTACTTGATGACAGTGTAAGCAAGAATATTGAATTACAAATTGAAAGAGGTGGCACATCAAAGAGTTTAACTTTGTTGGTGCAAGATTTGCACTCAATAACTCCTGACTATTTCTTAGAAGTGAGTGGGGCAGTAATACATCCTCTTTCTTATCAGCAGGCTAGAAACTTCCGTTTCCATTGCGGTCTTGTTTACGTGGCTGAACCAGGATATATGCTCTTCAGAGCAGGTGTTCCTCGCCATGCAATAATTAAGAAATTTGCTGGGGAAGAAATATCTTGTCTCGAGGAACTAATAACAGTTATTTCTAAACTATCTAGGGGCGCTCGAGTACCATTGGAATATATAAGTTACATGGATCGTCATCGAAGGAAGTCTGTCTTGGTTACAGTTGATAGGCATGAATGGTATGCACCTCCCCAGATATACACTCGTGATAACAGTACTGGCCTTTGGATTGCTAAGCCAGCTCTTCAGCGTGATTCCCCCTTTCTATCGTCTGGTGCAAAAGATGTTGATAATATGTCAAGACAGCCAATTTCAGTAACTGGCGAGCATACTTGTGAGGGTCATGTGTGTGAAGGTAACAATCAGGACTTTGTTGATGGTGTCACTAACATGGAAACTAATTGTGAAGATCCCTCAGAGTGTGCATCTCATCAGAATGCATCTGATGGCGTGTTGAAAAAACGAAGAGTGGAGGAAGATTTATCAGCTGATGGAAGTGTTGTTGCTGATTTATCCCAAAACGGTACCAGGGAAACTAAGTTAGAAAAATCTAGTGTCACACAGGATGACATGTTAATGGATTTTCAAGGTGCGACTGCAGCTGCAGCAAATGCATCAGTTGCTGAACGTGTGATTGAGCCTACTCTTGTGATGTTTGAGGTTCATGTTCCGCCATCTTGTATGCTTGATGGTGTTCATTCACAGCACTTTTTTGGAACTGGTGTCATAATATATCACTCCAAAGATATGGGATTAGTTGTAGTTGACAAGAATACAGTTGCAATATCTGCCTCTGATGTAATGCTATCCTTCGCTGCCTTCCCAGTTGAAATTCCAGGAGAGGTTGTATTTCTCCATCCTGTTCATAATTATGCTCTCATATCATATGATCCCTCTGCATTGGGACCTGTTGGTGGTTCTGTCGTTCGTGCTGCAGAGTTACTTCCAGAGCCAGCATTACGTCGGGGAGATTCTGTTTACCTTGTGGGGTTGAGTAGAAGCCTTCAAGCAACTTCTAGGAAATCAGTTGTTACCAATCCTTGTGCTGCATTAAATATAGGATCTGCTGATTCTCCTCGCTACAGAGCAACCAATATGGAAGTAATTGAGCTTGATACAGATTTTGGAAGTACATTTTCGGGTGTGCTAGCTGACGAACAAGGAAGGGTCCAAGCTATATGGGGAAGCTTCTCCACTCAGAAGAAGGGCAAGAGAAGAAAGAAGAAAACTGGAAAGAGACGAGAGAAGACAAATTTTACTCAAACTTCAAAAGGCTACCTGAGGCTTAAATTTGGCTGCAGTACCTCAGAAGATCATCAATTTGTGAGGGGTATTCCAATTTATGCAATAAGCCAGGTCCTTCATAAGATTGTATCCGGCGCAAATGGCCCACCTCTTCTCATAAATGGTGTCAAAAGGCCCATGCCACTTTTGAGAATTTTAGAGGTTGAACTTTATCCAACATTACTTTCAAAGGCCCGGAGTTTTGGATTAAGTGATGATTGGATTCAGGCACTTGTTAAGAAAGATCCAGTGAGACGTCAGGTTTTACGTGTTAAAGGTTGTTTGGCTGGATCAAAGGCTGAAAATCTTTTAGAACAAGGGGACATGGTCTTAGCAATCAATAAAGAACCAGTCACATGCTTCCGTGATATTGAAAATGCTTGTCAAGATTTAGACAAATCAAATGCGAATGATGGGAAGCTTCACTTGACTATTTTCCGGCAGGGACAAGAGGTTGAACTTCTTGTGGGAACAAATGTTAGGGATGGAAATGGCACTGCACGTGCAATTAATTGGTGTGGCTGTATTGTGCAAGATCCACATCCAGCAGTTCGTGCACTTGGATTTCTTCCCGAAGAAGGTCATGGTGTATATGTGGCAAGATGGTGTCATGGGAGTCCTGTACATAGATATGGTCTGTATGCTCTTCAATGGATAGTCGAAATTAATGGAAAACCAACTCCAAATCTAGATGCTTTTGTTGATGTGACAAAGGAACTAGAACATGGAGAGTTTGTTCGGGTAAGGACAATTCACCTCAATGGGAAGCCACGAGTCCTAACATTGAAGCAAGATTTGCACTATTGGCCTACGTGGGAATTGAGATTTGATCCAAATTCTGCGATGTGGCATCGCAATATAATCAAGGGATTGAACTGCAGTACTGTATGA 3426 0.4416 MGDQEERLESEGLDSGAVVKTDDLCMEIDPPFQENIATAEDWRKALNRVVPAVVVLRTTATRSFDTESAAASYATGFIVDKSRGIILTNRHVVKPGPVVAEAMFLNREEVPVHPIYRDPVHDFGFFRYDPGAIQFLNYEEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLERVVRALRFIQKGSETYVDKWQAVSIPRGTLQVTFLHKGFDETRRLGLKTETEQIVRQASPAGETGMLVVESVVPGGPGYKHLEPGDVLVRVNGEVITQFLKLETLLDDSVSKNIELQIERGGTSKSLTLLVQDLHSITPDYFLEVSGAVIHPLSYQQARNFRFHCGLVYVAEPGYMLFRAGVPRHAIIKKFAGEEISCLEELITVISKLSRGARVPLEYISYMDRHRRKSVLVTVDRHEWYAPPQIYTRDNSTGLWIAKPALQRDSPFLSSGAKDVDNMSRQPISVTGEHTCEGHVCEGNNQDFVDGVTNMETNCEDPSECASHQNASDGVLKKRRVEEDLSADGSVVADLSQNGTRETKLEKSSVTQDDMLMDFQGATAAAANASVAERVIEPTLVMFEVHVPPSCMLDGVHSQHFFGTGVIIYHSKDMGLVVVDKNTVAISASDVMLSFAAFPVEIPGEVVFLHPVHNYALISYDPSALGPVGGSVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSVVTNPCAALNIGSADSPRYRATNMEVIELDTDFGSTFSGVLADEQGRVQAIWGSFSTQKKGKRRKKKTGKRREKTNFTQTSKGYLRLKFGCSTSEDHQFVRGIPIYAISQVLHKIVSGANGPPLLINGVKRPMPLLRILEVELYPTLLSKARSFGLSDDWIQALVKKDPVRRQVLRVKGCLAGSKAENLLEQGDMVLAINKEPVTCFRDIENACQDLDKSNANDGKLHLTIFRQGQEVELLVGTNVRDGNGTARAINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKPTPNLDAFVDVTKELEHGEFVRVRTIHLNGKPRVLTLKQDLHYWPTWELRFDPNSAMWHRNIIKGLNCSTV* 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0952 1141 Gene3D - 277 374 IPR036034 GO:0005515
Vra3g0952 1141 Gene3D - 1014 1112 IPR036034 GO:0005515
Vra3g0952 1141 Pfam PDZ-like domain 373 446 IPR025926 -
Vra3g0952 1141 Pfam PDZ-like domain 1012 1087 IPR025926 -
Vra3g0952 1141 SUPERFAMILY PDZ domain-like 935 1037 IPR036034 GO:0005515
Vra3g0952 1141 SUPERFAMILY Trypsin-like serine proteases 632 820 IPR009003 -
Vra3g0952 1141 Pfam PDZ domain 305 357 IPR041489 -
Vra3g0952 1141 Gene3D - 642 827 - -
Vra3g0952 1141 Gene3D - 933 1007 IPR036034 GO:0005515
Vra3g0952 1141 CDD PDZ_serine_protease 280 366 - -
Vra3g0952 1141 PANTHER PROTEASE DO-LIKE 7 21 819 - -
Vra3g0952 1141 PANTHER PROTEASE DO-LIKE 7 845 1136 - -
Vra3g0952 1141 Gene3D - 146 256 IPR043504 -
Vra3g0952 1141 SUPERFAMILY PDZ domain-like 304 403 IPR036034 GO:0005515
Vra3g0952 1141 Gene3D - 29 139 IPR043504 -
Vra3g0952 1141 Pfam Trypsin-like peptidase domain 74 220 - -
Vra3g0952 1141 ProSiteProfiles PDZ domain profile. 269 333 IPR001478 GO:0005515
Vra3g0952 1141 PANTHER PRO-APOPTOTIC SERINE PROTEASE NMA111 845 1136 - -
Vra3g0952 1141 PANTHER PRO-APOPTOTIC SERINE PROTEASE NMA111 21 819 - -
Vra3g0952 1141 SMART pdz_new 280 359 IPR001478 GO:0005515
Vra3g0952 1141 SMART pdz_new 909 994 IPR001478 GO:0005515
Vra3g0952 1141 SMART pdz_new 1030 1099 IPR001478 GO:0005515
Vra3g0952 1141 SUPERFAMILY PDZ domain-like 1039 1123 IPR036034 GO:0005515
Vra3g0952 1141 PRINTS HtrA/DegQ protease family signature 84 96 IPR001940 GO:0004252|GO:0006508
Vra3g0952 1141 PRINTS HtrA/DegQ protease family signature 150 174 IPR001940 GO:0004252|GO:0006508
Vra3g0952 1141 PRINTS HtrA/DegQ protease family signature 191 208 IPR001940 GO:0004252|GO:0006508
Vra3g0952 1141 PRINTS HtrA/DegQ protease family signature 213 230 IPR001940 GO:0004252|GO:0006508
Vra3g0952 1141 PRINTS HtrA/DegQ protease family signature 318 330 IPR001940 GO:0004252|GO:0006508
Vra3g0952 1141 Pfam Peptidase family M50 305 370 IPR008915 GO:0004222|GO:0006508
Vra3g0952 1141 SUPERFAMILY Trypsin-like serine proteases 40 244 IPR009003 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0952 K22686 - gmx:100777219 2084.69