Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0949 ATGGAAGAAAGCCCTCGAGCTAGCAGAAAGCGAAGCCATCCTTTTTCTTCTTCTTCTCCTTCTCCTCCACATACCAAGCGCCCCAATTTCCCTTCCTTCCAAGACATCCCCAACCTTCCTTCCAACATCAAATCCCTCTGTCACCTCATTGCCACTACCTCCGCCGCCGCCATCGAGCACGCCCTCGAAGGCGCCGCAGTCGTCATCACCCCTCACGACGTTGAGGAAGTCCTCAGACTCTCCTACGGCTTCCCAGGCCAGGCCGTCAAATTCTTCCGGTGGAGCGCCCGCCAACTCCACGACAACCACACTCCTTATTCCTGGAACCTCGTGGTCGACCTCTTGGGCAAGAATCGCTTCTTCGACGCGATGTGGGACGCTATTAAGTCAATGCAGAAAGAAGGGCTACTCTCGCTGGCCACCTTCGCCTCTGTCTTCGAGAGCTATGTCATCGCCAACAGAACCCGGGAAGCGATTTTGGCTTTTGAGGCTATGGAGAATTACGGTTGTGTGAGGGACGTGATTGCTTTGAACTCATTGTTGAGTGCAATTTGTAGGGATGGTAGGACAGTTGATGCTTGTGATTACTTGCAGATTGCAAAGAAATTTGTCCGGCCGGATGCCGATTCTTACGCGATATTGATGGAAGGGTGGGAGGGTGAAGGAGATAAGGGTGTGTTTGGTGCGAAGGAGACTTTTGCTGAGATGGTGATTGAGATTGGATGGGATCCTGCCAATGTGCCTGCTTATGATTCATTCCTGTGTGCCCTTGTTAGAGGGCCTGATGGATTACTAGAGGCTATTAAGTTTGTTGATTCAATGAGGGATAGGAGGTGTTACCCTGGTGTGAGGTTCTTCAAGGTTGCATTGGATGAGTGTATCAAGTTTCATGATGCTAGGACTGCAAAGTTTTTCTGGGAGGTGTTGGTGGAGGTGGGGAGGGTGTTGCAACCCACCACGGAGATGTACAATTTGATGATTGCTTTGTTTTGTTATTGTGGTGATACTGATGATGCGAGGAGGATGCTTGATGAAATGGTTTTCCGAGGGGCCTTTCCTGATGTGGCGACCTATAATTTGTTGTTTAAGTTCTTGATCAAGGGGAGGAAGTTGAGGGAGGCGTATGCAGTGTTTGCTGAAATGGTGAAGAACGAGTTTGTGCCGGATCAGGATAACTGTGATGCGGCGGTTAAGGTATATGTGAATGGTGGGGAGCCTCTTTTGGCGATGAAGGTTTGGAAGTGTTTGGTTGAGAATTATCAGAGTGATTTGGAGCGGACAGCAAATTTTCTGGTTGTGGGGCTTCGTGATTTGAATAGGGTTCCGGAGGCGCTTAAGTATGCTGAGGATATGATTGGAAGAGGAATCAGGTTGTCCTCTTCCACACTGTCAAAACTGAGACAAACCCTTGTCAAGGAAAGAAAGGAATTTGTGTATGAAGAACTTTTGAGAAAGTGCAATTCTCAATAA 1470 0.4864 MEESPRASRKRSHPFSSSSPSPPHTKRPNFPSFQDIPNLPSNIKSLCHLIATTSAAAIEHALEGAAVVITPHDVEEVLRLSYGFPGQAVKFFRWSARQLHDNHTPYSWNLVVDLLGKNRFFDAMWDAIKSMQKEGLLSLATFASVFESYVIANRTREAILAFEAMENYGCVRDVIALNSLLSAICRDGRTVDACDYLQIAKKFVRPDADSYAILMEGWEGEGDKGVFGAKETFAEMVIEIGWDPANVPAYDSFLCALVRGPDGLLEAIKFVDSMRDRRCYPGVRFFKVALDECIKFHDARTAKFFWEVLVEVGRVLQPTTEMYNLMIALFCYCGDTDDARRMLDEMVFRGAFPDVATYNLLFKFLIKGRKLREAYAVFAEMVKNEFVPDQDNCDAAVKVYVNGGEPLLAMKVWKCLVENYQSDLERTANFLVVGLRDLNRVPEALKYAEDMIGRGIRLSSSTLSKLRQTLVKERKEFVYEELLRKCNSQ* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0949 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Vra3g0949 489 TIGRFAM PPR: pentatricopeptide repeat domain 322 355 IPR002885 -
Vra3g0949 489 TIGRFAM PPR: pentatricopeptide repeat domain 357 389 IPR002885 -
Vra3g0949 489 TIGRFAM PPR: pentatricopeptide repeat domain 106 136 IPR002885 -
Vra3g0949 489 TIGRFAM PPR: pentatricopeptide repeat domain 141 174 IPR002885 -
Vra3g0949 489 Pfam PPR repeat 106 136 IPR002885 -
Vra3g0949 489 Gene3D Tetratricopeptide repeat domain 196 313 IPR011990 GO:0005515
Vra3g0949 489 Gene3D Tetratricopeptide repeat domain 314 432 IPR011990 GO:0005515
Vra3g0949 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Vra3g0949 489 Gene3D Tetratricopeptide repeat domain 78 193 IPR011990 GO:0005515
Vra3g0949 489 Pfam PPR repeat family 318 365 IPR002885 -
Vra3g0949 489 PANTHER OS02G0711100 PROTEIN 8 487 - -
Vra3g0949 489 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 8 487 - -
Vra3g0949 489 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0949 Vra-Chr3 9522347 9524617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0949 102 475 Glycosyltransferase AT1G05670 22.912 2.21e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0949 - - pvu:PHAVU_001G231300g 888.641