Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0943 ATGCAATATGGATTCGAATTTCCCTCTTGCTTGTGTCATTTTTCTGAATACTCAATTCATTCAAGGGCAAAAGTTTTCAGTAGACTTCCATGGGGAAGTAACAATCACTTCATAATGGAAATAAGTATTGCAAGGTCTCATCTTGAAACACGGGGAGTATTCTTTTCAAATATTTCAAGAACAGTAGCATGGGAAAGCTCTAAGAAACCTCCATGCACTGTGGCTGCCTTAAGTTCTACACAGGATTTTCACAGACTGGCCTCTTCCTGTCAAGCTTTTACTTCGGTGTATCCTAAAAGGCATTTAATCTGTAGACCAAACTCCATGCCGATTAGTTTACAGGAATCTGCATCCAATGGAGATAATTCACTTGAAGGTGAGAATCCATCTATAGACTCAGAAGAGGAGACTTTGGCACAACCACCTACCCGTGAACAGATAATGGCACTGCTTGCTGACGCACAGAGAGAACAACTCACTAAGAAGCTTAGTGAAGCCAACCAGCAAAATCGGTTTCTAAAAAGACAGTTGAAAGTAAAGGAGGATGCATTGGTAAAATTCAAAAGTGAACTTGGAGTCATGGAGCTTGAAATTCAGGCTTTAGCTAGCCTAGCAGAAGAAATAGCTCAATGCGGTATTCCAGAAGGTTCAAGGAAGATCAATGGAAAGTACATTCATTCTCACCTTGTTGCTAGATTAGAAGCTGTACATGAAAAATTGAAGGAACAAATAAAGGATGTCGATGCGGCACAATCAAAGGAGGTTTCCGTGTTTTGGATTGGCATGGCTGAGAGCGTGCAAGTTATGGGAACCTTTGATGGCTGGAGCCAAGGAGAGCATCTTTCACCAGAATATAATGGTTCTTACACAAAGTTTTCAACAACATTGTTGCTCAGGCCAGGAAGGTATGAAATCAAATTCTTAGTAGATGGTGAATGGCAGCTGTCTCCAGAATTCCCCATCATTGGTGAAGGGTTGACGAAAAATAATTTATTAGTTGTTGAGTAA 1008 0.4058 MQYGFEFPSCLCHFSEYSIHSRAKVFSRLPWGSNNHFIMEISIARSHLETRGVFFSNISRTVAWESSKKPPCTVAALSSTQDFHRLASSCQAFTSVYPKRHLICRPNSMPISLQESASNGDNSLEGENPSIDSEEETLAQPPTREQIMALLADAQREQLTKKLSEANQQNRFLKRQLKVKEDALVKFKSELGVMELEIQALASLAEEIAQCGIPEGSRKINGKYIHSHLVARLEAVHEKLKEQIKDVDAAQSKEVSVFWIGMAESVQVMGTFDGWSQGEHLSPEYNGSYTKFSTTLLLRPGRYEIKFLVDGEWQLSPEFPIIGEGLTKNNLLVVE* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0943 335 MobiDBLite consensus disorder prediction 114 140 - -
Vra3g0943 335 CDD E_set_AMPKbeta_like_N 254 334 - -
Vra3g0943 335 Pfam Glycogen recognition site of AMP-activated protein kinase 256 331 IPR032640 -
Vra3g0943 335 PANTHER PROTEIN PTST, CHLOROPLASTIC 40 335 - -
Vra3g0943 335 Coils Coil 230 253 - -
Vra3g0943 335 MobiDBLite consensus disorder prediction 114 137 - -
Vra3g0943 335 Gene3D Immunoglobulins 245 334 IPR013783 -
Vra3g0943 335 SUPERFAMILY E set domains 255 334 IPR014756 -
Vra3g0943 335 Coils Coil 149 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0943 Vra-Chr3 9478697 9484103 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0943 - - vra:106758029 655.21