Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0925 ATGGGGTTTGGTTTGTTAGCTTCGAAGGCCCTCAGGCCCACCTCGAGGCTCCTCCTCTCTTCCCAAAACCCTACCATTTTCCTCCGAACCATCGTCTCCAAGCCTCAGCTTTGCAATCCCGAGGCCTCTGCCGCGCAGCCGGCGCAGCCACCACCCGTCGATCTTCCTCCGCGGAGTCCGCTCGCCGGCGCGCGCGTCCACTTCGCAAACCCCGACGATGCCATCGAGGTCTTCGTGGACGGTTACCCCGTCAAAATCCCCAAGGGAATGACCGTTCTCCAGGCCTGCGAGGTCGCCGGCGTCGATATCCCGCGGTTCTGCTACCACAGCAGACTCTCCATCGCCGGCAATTGTCGCATGTGCCTTGTCGAGGTCGAGAAATCGCCCAAACCTGTCGCTTCTTGTGCCATGCCCGCTCTTCCTGGAATGAAAATTAAGACTGACACACCTGTGGCAAAGAAGGCTCGAGAGGGGGTGATGGAGTTTTTATTGATGAATCATCCATTAGATTGCCCAATTTGTGATCAAGGTGGGGAATGTGATCTTCAGGATCAGTCTATGGCATTCGGCTCTGATCGCGGGCGGTTTACAGAAGTGAAGAGATCTGTGGTAGATAAAAATCTTGGACCTCTGGTCAAGACTGTGATGACTCGGTGCATTCAATGTACAAGGTGTGTTAGATTTGCAACTGAGGTCGCTGGGGTTCAGGATCTTGGCATGTTAGGTCGTGGAAGTGGAGAAGAGATTGGGACATATGTTGAAAAACTTTTGACAAGTGAGCTTTCTGGAAATGTCATAGATATCTGTCCTGTTGGAGCTCTAACTTCAAAACCGTTTGCGTTTAAAGCCCGAAATTGGGAGTTGAAGGGCACAGAGACCATCGATGTTACTGATGCTGTTGGCTCCAATATTCGAATTGATAGTAGAGGACCTGAAGTGATGCGCATTGTTCCTCGTTTAAACGAGGATATAAATGAAGAATGGATTTCAGACAAAACCCGCTTTTGCTATGATGGTTTAAAGAGGCAGAGGTTAAATGACCCCATGATTCGTGGTCCTGATGGACGCTTTAAGGCTGTTAACTGGCGTGATGCCCTTTCTGTGATAGCAGATATTGCCCACCAAGTTAAACCAGAAGAAATTGTTGGAGTAGCTGGGAAACTTTCTGATGCAGAGTCCATGATTGCGCTAAAAGATTTCTTAAATAGGATGGGGTCAAATGATGTGTGGGGTGAAGGCATTGGTGTAAATACTAATGCTGATTTCAGATCGGGTTATATTATGAATACCAGCATTGCTGGTCTTGAAAAAGCGGATGTGTTCCTTTTGGTTGGTACCCAGCCACGAGTAGAAGCTGCTATGGTTAATGCCAGAATACGCAAGACTGTCAGATCAAACCAAGCCAAAGTTGGGTACATTGGGCCTGCTACTGATTTCAACTATGACCACAAACATCTTGGTACTGACCCTCAAACACTTGTTGAAATTGCTGAGGGTCGCCACCCATTTTTCAAGACACTATCAGATGCCAAAAACCCTGTTATCATTGTTGGTGCCGGGGTTTTTGAGAGGAAGGACCAGGATGCAATTTTTGCCGCTGTTGAAACCATTGCACAAAAGGCAAATGTTGTCAGACCTGACTGGAATGGCCTTAATGTGTTGCTTCTCCATGCTGCCCAGGCTGCTGCACTTGACCTTGGACTAGTTCCGCAATCTGAGAAAAGCCTCGAGTCTGCAAAATTTGTATACTTGATGGGTGCTGATGATGTGAACTTGGACAAGATCCCAGATGATGCTTTTGTTGTTTATCAAGGTCACCATGGTGACAAAAGTGTTTACCGTGCAAATGTTATTTTACCAACGGCAGCATTCAGTGAGAAGGAAGGGACCTATCAAAATACAGAAGGATGCACGCAACAAACTTTGCCTGCAGTTCCAACCGTTGGTGACTCCAGAGATGATTGGAAAATAATTCGAGCTCTGTCTGAGGTGGCAGGAGTGCGTCTGCCCTATGATACAATTGGGGCTGTTCGTGCCCGAATCAGGAATGTAGCCCCAAACCTTGTGAACGTGGATGAGAGAGAGCCAGCCACATTGCCATCTTCATTGAGACCATCCTTCACTCAGAAGGTAGACACAACTCCATTCGGGACTGTAATTGAAAATTTCTACATGACTGACGCCATAACCAGGGCATCAAAGATAATGGCACAATGCAGTGCTACGCTGTTGAAGAAGTGA 2241 0.4788 MGFGLLASKALRPTSRLLLSSQNPTIFLRTIVSKPQLCNPEASAAQPAQPPPVDLPPRSPLAGARVHFANPDDAIEVFVDGYPVKIPKGMTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPVAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEVKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLLTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRIVPRLNEDINEEWISDKTRFCYDGLKRQRLNDPMIRGPDGRFKAVNWRDALSVIADIAHQVKPEEIVGVAGKLSDAESMIALKDFLNRMGSNDVWGEGIGVNTNADFRSGYIMNTSIAGLEKADVFLLVGTQPRVEAAMVNARIRKTVRSNQAKVGYIGPATDFNYDHKHLGTDPQTLVEIAEGRHPFFKTLSDAKNPVIIVGAGVFERKDQDAIFAAVETIAQKANVVRPDWNGLNVLLLHAAQAAALDLGLVPQSEKSLESAKFVYLMGADDVNLDKIPDDAFVVYQGHHGDKSVYRANVILPTAAFSEKEGTYQNTEGCTQQTLPAVPTVGDSRDDWKIIRALSEVAGVRLPYDTIGAVRARIRNVAPNLVNVDEREPATLPSSLRPSFTQKVDTTPFGTVIENFYMTDAITRASKIMAQCSATLLKK* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0925 746 CDD fer2 75 146 IPR001041 GO:0051536
Vra3g0925 746 Gene3D - 279 394 - -
Vra3g0925 746 ProSiteProfiles His(Cys)3-ligated-type [4Fe-4S] domain profile. 151 190 IPR019574 GO:0016491
Vra3g0925 746 Pfam Molybdopterin oxidoreductase 344 663 IPR006656 GO:0016491
Vra3g0925 746 CDD MopB_Res-Cmplx1_Nad11 292 665 - -
Vra3g0925 746 ProSitePatterns Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 104 121 IPR000283 GO:0008137|GO:0016020|GO:0042773
Vra3g0925 746 SUPERFAMILY Formate dehydrogenase/DMSO reductase, domains 1-3 286 693 - -
Vra3g0925 746 Gene3D - 74 196 - -
Vra3g0925 746 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 73 151 IPR001041 GO:0051536
Vra3g0925 746 ProSitePatterns Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 171 183 IPR000283 GO:0008137|GO:0016020|GO:0042773
Vra3g0925 746 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 52 705 - -
Vra3g0925 746 Pfam NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 156 193 IPR019574 GO:0016491
Vra3g0925 746 Pfam NADH-ubiquinone oxidoreductase subunit G, C-terminal 708 739 IPR015405 GO:0016651|GO:0051536
Vra3g0925 746 TIGRFAM NuoG: NADH dehydrogenase (quinone), G subunit 77 661 IPR010228 GO:0016651|GO:0051536
Vra3g0925 746 PANTHER NADH-UBIQUINONE OXIDOREDUCTASE 75 KDA SUBUNIT, MITOCHONDRIAL 52 705 - -
Vra3g0925 746 SUPERFAMILY 2Fe-2S ferredoxin-like 75 147 IPR036010 GO:0051536
Vra3g0925 746 Gene3D - 200 277 - -
Vra3g0925 746 ProSiteProfiles Prokaryotic molybdopterin oxidoreductases 4Fe-4S domain profile. 288 344 IPR006963 GO:0016491
Vra3g0925 746 SUPERFAMILY 4Fe-4S ferredoxins 148 284 - -
Vra3g0925 746 ProSitePatterns Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 218 228 IPR000283 GO:0008137|GO:0016020|GO:0042773
Vra3g0925 746 Gene3D - 579 696 - -
Vra3g0925 746 SMART NADH_G_4Fe_4S_3_2 156 196 IPR019574 GO:0016491
Vra3g0925 746 MobiDBLite consensus disorder prediction 40 60 - -
Vra3g0925 746 Pfam 2Fe-2S iron-sulfur cluster binding domain 73 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0925 Vra-Chr3 9269354 9275435 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0925 K03934 - gmx:100776683 1388.63