Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0893 ATGTGGAGCTCCACTACGAGGATGATGGTGGCCGTTGCAGCCGTCACGCTCATGATTTTTCTCTCATCGGCGTCGGCCGACGACGTCGTTGCACTCACCCAGAACACCTTCGAAAACGAGGTTGGCAAGGATCGTGCCGCTCTCGTCGAGTTTTACGCCCCCTGGTGTGGACATTGTAAAAAGCTTGCCCCGGAGTACGAACAACTCGGAACGAGTTTCAGGAAAACGAAGTCGGTTTTGATTGCGAAGGTGGATTGTGATGAACATAAGAGCGTTTGCAGTAAATACGGGGTTTCTGGCTACCCTACCATTCAATTTTTTCCCAAGGGATCTCTACAGCCAAAAAAGTATGAAGGTGCACGGACTGCGGAAGCCCTTGCTGCCTTTGTGAACCTTGAAGCAGGTACTAATGTGAAGATAGCTTCTGCTCCATCCAGTGTGGTAATTCTCTCCCCAGATAACTTTGATGAGGTTGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGGTGTGGTCACTGCAAGGCCCTTGCCACTACTTATGAAAAGGTTGCTGCAGCATTTAACCTGGATGAAGAAGTAGTTATAGCCAATGTTGATGCTGACAAGTATAAGAATTTGGCTGAGAAATATGGTGTTACTGGTTACCCTACGCTGAAGTTTTTCCCTAAGAGCAATAAAGCTGGTGAAGATTATAGTGGTGGTCGTAGTTTGGATGATTTTGTAGCCTTCATCAATGAGAAATGTGGTACATACCGTGATGGAAAAGGGCAGCTTAGTTCTAAAGCTGGTATTGTAGAATCTCTGGATGGCTTGGTGAAGGAGTTTGTGAATGCTGATGATAATGACAAGAAGGCAGTATATTCCCGGCTTGAGGAGGAAGTTAAGACGCTCAAGGGTTCTGCTGCCAGATATGGCAACCTCTACTTAAAACTTGCCAAAAAGAGTATGGAAAAGGGTACGGACTATGCAAAGAATGAAATTCTTCGTCTAGACCGCATGCTTGAGAAGTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTGAAGAAGAACATCTTATCATCGTTTGCTTGA 1089 0.4545 MWSSTTRMMVAVAAVTLMIFLSSASADDVVALTQNTFENEVGKDRAALVEFYAPWCGHCKKLAPEYEQLGTSFRKTKSVLIAKVDCDEHKSVCSKYGVSGYPTIQFFPKGSLQPKKYEGARTAEALAAFVNLEAGTNVKIASAPSSVVILSPDNFDEVVLDETKDVLVEFYAPWCGHCKALATTYEKVAAAFNLDEEVVIANVDADKYKNLAEKYGVTGYPTLKFFPKSNKAGEDYSGGRSLDDFVAFINEKCGTYRDGKGQLSSKAGIVESLDGLVKEFVNADDNDKKAVYSRLEEEVKTLKGSAARYGNLYLKLAKKSMEKGTDYAKNEILRLDRMLEKSISPAKADEFTLKKNILSSFA* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0893 362 CDD PDI_a_ERp38 28 130 - -
Vra3g0893 362 Pfam Endoplasmic reticulum protein ERp29, C-terminal domain 268 361 IPR011679 GO:0005783
Vra3g0893 362 ProSitePatterns Thioredoxin family active site. 48 66 IPR017937 -
Vra3g0893 362 PANTHER PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED 11 361 - -
Vra3g0893 362 CDD ERp29c 270 361 IPR011679 GO:0005783
Vra3g0893 362 PANTHER PROTEIN DISULFIDE ISOMERASE-LIKE 2-1 11 361 - -
Vra3g0893 362 CDD PDI_a_ERp38 146 249 - -
Vra3g0893 362 ProSitePatterns Thioredoxin family active site. 167 185 IPR017937 -
Vra3g0893 362 PRINTS Thioredoxin family signature 47 55 - -
Vra3g0893 362 PRINTS Thioredoxin family signature 55 64 - -
Vra3g0893 362 PRINTS Thioredoxin family signature 216 227 - -
Vra3g0893 362 ProSiteProfiles Thioredoxin domain profile. 137 254 IPR013766 -
Vra3g0893 362 SUPERFAMILY ERP29 C domain-like 267 361 IPR036356 -
Vra3g0893 362 Pfam Thioredoxin 29 131 IPR013766 -
Vra3g0893 362 Pfam Thioredoxin 147 250 IPR013766 -
Vra3g0893 362 Gene3D - 266 362 IPR036356 -
Vra3g0893 362 Gene3D Glutaredoxin 138 264 - -
Vra3g0893 362 SUPERFAMILY Thioredoxin-like 27 131 IPR036249 -
Vra3g0893 362 Gene3D Glutaredoxin 22 137 - -
Vra3g0893 362 SUPERFAMILY Thioredoxin-like 144 256 IPR036249 -
Vra3g0893 362 ProSiteProfiles Thioredoxin domain profile. 11 135 IPR013766 -
Vra3g0893 362 TIGRFAM pdi_dom: protein disulfide-isomerase domain 32 131 IPR005788 GO:0003756
Vra3g0893 362 TIGRFAM pdi_dom: protein disulfide-isomerase domain 151 252 IPR005788 GO:0003756
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0893 Vra-Chr3 8986618 8990423 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0893 K09584 - gmx:100796355 646.736