Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0891 ATGTTTTTGGTCGATTGGTTTTATGGGATTCTAGCGTCGCTTGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCCTGGGTCTCGATAACGCTGGCAAAACCACCCTGCTTCACATGCTCAAAGACGAGAGATTAGTCCAGCATCAGCCCACCCAGTATCCTACGTCAGAGGAGTTGAGTATTGGAAAGATCAAGTTCAAAGCTTTTGATCTAGGGGGTCATCAGATTGCTCGAAGAGTGTGGAAAGATTACTATGCCCAGGTAGATGCAGTGGTGTACTTGGTTGATGCGTATGACAAGGAAAGATTTGCTGAGTCGAAAAAAGAGCTGGATGCTCTACTCTCTGATGAATCTTTAGCCAATGTCCCTTTCCTTGTCCTTGGGAACAAAATTGATATTCCATATGCTGCCTCAGAAGAAGAGCTGCGTTACCATTTGGGCCTGACTAACTTCACCACAGGCAAAGGTAAGGTAAATTTGGCCGACTCAAATGTCCGTGCCATGGAGGTGTTCATGTGCAGTATTGTGAAGAAAATGGGTTATGGGGAAGGTTTCAAATGGCTTTCTCAGTACATCAAATAG 582 0.4536 MFLVDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAYDKERFAESKKELDALLSDESLANVPFLVLGNKIDIPYAASEEELRYHLGLTNFTTGKGKVNLADSNVRAMEVFMCSIVKKMGYGEGFKWLSQYIK* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0891 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 192 IPR027417 -
Vra3g0891 193 Pfam ADP-ribosylation factor family 8 192 IPR006689 GO:0003924|GO:0005525
Vra3g0891 193 SMART sar_sub_1 4 192 IPR006689 GO:0003924|GO:0005525
Vra3g0891 193 CDD Sar1 2 192 - -
Vra3g0891 193 Gene3D - 1 193 IPR027417 -
Vra3g0891 193 TIGRFAM small_GTP: small GTP-binding protein domain 19 138 IPR005225 GO:0005525
Vra3g0891 193 PANTHER PROTEIN SAR1A, PUTATIVE, EXPRESSED-RELATED 1 193 - -
Vra3g0891 193 ProSiteProfiles small GTPase SAR1 family profile. 14 192 - -
Vra3g0891 193 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Vra3g0891 193 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Vra3g0891 193 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Vra3g0891 193 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Vra3g0891 193 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
Vra3g0891 193 ProSiteProfiles small GTPase Arf family profile. 14 192 - -
Vra3g0891 193 SMART arf_sub_2 4 193 - -
Vra3g0891 193 PANTHER RE74312P 1 193 IPR006687 GO:0005525|GO:0006886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0891 Vra-Chr3 8974647 8976921 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0891 K07953 - gmx:100305650 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0891 3 8974647 8976921 Vra3g0891 3 8974647 8976921 ECH
Vra7g2789 7 48140593 48142804 Vra3g0891 3 8974647 8976921 ECH
Vra5g0078 5 610840 613340 Vra3g0891 3 8974647 8976921 ECH