Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0889 ATGTCACGTTTACTACGAAAATCCCTTAGGACTAAGGCCTTGTCCCTGTTTCTGCACAAACACGTCGGAAACTCGTTCGAGTCGCATCACACTCTGGCTTACTCAAGCTGGTTTTGTTGTCGCCAATCATCACATTCCCTTCCACATAAACCCACTCCTTGCTTCGCTTCAAATTCGATCCCAAGTTTCAGCTTCTCTAGCGCGCTTCTCCAAATTCGCTTTTGGGCCTCTGAGGCCGCCGCCTCTGAGCCCTCAACCTCTGATGGGCTCACGGTCCAACAAATTCTGGCCAATAATTGGAACATTCTGGACGAAAACGAAGGCGATTGGAAGAGTCATGCCACCGCTATAGCTCAATCTATTGATTTGATCAAACGCCGCTTGCAGTGGGAAAAATTGAAGGTGAGGTTGGATATGTTATCATTCCAGCTGGGTAAGGAGGACCTTTGGGATGATCCGGTGCGCGCAGGTAAAATAAGCCGAGAGCATGGTTCGCTCCTGGGGAAAATGAAAGAAGTAAATGCATTGGAACAAGAATTACTTGAGCATATCGACATGATAAAGCTTGCCCGCGAAGAGAATGATGCGGATTTGGAATGGGAATCATTGAAAGTGTTGCTTAACATGAGAAGAGATGCAAAACAGAAAGAGCTAGAGGCGTTGCTTGCTGGAGAGCAAGATTCTTGTTCTTGTTACATTGAGGTTCAAGCTGGGGCTGGGGGTACGGAAAGTATGGACTGGGCATCAATGGTCATGCAGATGTATAAGTCATGGGCACAGCGGCATGGATATAAAGTAACTTTGATGGATGAAATGCCTGGTGAGATTGCAGGAATCAAGCGAGCTACCATTAAAGTAGATGGTGAGTTTGCATTTGGATATGCCAAAGCAGAAATAGGTGTGCACAGGCTGGTGCGCATATCACCTTTTGATAGCAATAAGCGACGACATACTTCATTTGCTGCTGTGGCAGTGATTCCAATCCTAGGTGATGGATCTACCCATGTACAGATTAATGAATCTGATCTTCGAATCGAACGATTTCGGGCTGGTGGTCCTGGTGGCCAGCATGCCAACACAACTGAGAGCGCTGTAAGAATAGTTCATATTCCCACAGGAGTTACTGCAACTTGTCAGAACGAAAGATCGCAGCATCAGAACAAGGCTTCAGCCATGGCTGTGCTTCAGTCAAGGTTAGACCAACTGGAGATGGCACGCCAAGCACAGTTGAATGCACAACATACACAGTCTCTCACTGACATAACGTGGGGCAGTCAGATTCGCAGTTATGTTCTCCATCCTTACCGTATGGTGAAAGATCTTAGAACTAACTATGAGGTTTCAGACCCTGACTCCGTCCTTGAGGGCGATCTAGACGGATTCATCTTGAGCTATCTATCAGCTTCTTTGGATAAAGATAATGATGCTTAA 1431 0.464 MSRLLRKSLRTKALSLFLHKHVGNSFESHHTLAYSSWFCCRQSSHSLPHKPTPCFASNSIPSFSFSSALLQIRFWASEAAASEPSTSDGLTVQQILANNWNILDENEGDWKSHATAIAQSIDLIKRRLQWEKLKVRLDMLSFQLGKEDLWDDPVRAGKISREHGSLLGKMKEVNALEQELLEHIDMIKLAREENDADLEWESLKVLLNMRRDAKQKELEALLAGEQDSCSCYIEVQAGAGGTESMDWASMVMQMYKSWAQRHGYKVTLMDEMPGEIAGIKRATIKVDGEFAFGYAKAEIGVHRLVRISPFDSNKRRHTSFAAVAVIPILGDGSTHVQINESDLRIERFRAGGPGGQHANTTESAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEMARQAQLNAQHTQSLTDITWGSQIRSYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASLDKDNDA* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0889 476 SUPERFAMILY Release factor 134 469 IPR045853 -
Vra3g0889 476 SMART PCRF_a_2 188 298 IPR005139 GO:0006415
Vra3g0889 476 Hamap Peptide chain release factor 2 [prfB]. 106 470 IPR004374 GO:0005737|GO:0006415|GO:0016149
Vra3g0889 476 Gene3D - 329 425 - -
Vra3g0889 476 TIGRFAM prfB: peptide chain release factor 2 111 468 IPR004374 GO:0005737|GO:0006415|GO:0016149
Vra3g0889 476 Pfam RF-1 domain 335 442 IPR000352 GO:0003747|GO:0006415
Vra3g0889 476 Gene3D - 233 462 - -
Vra3g0889 476 Gene3D Release factor 109 219 - -
Vra3g0889 476 Coils Coil 392 412 - -
Vra3g0889 476 PANTHER PEPTIDE CHAIN RELEASE FACTOR PRFB1, CHLOROPLASTIC-RELATED 94 474 - -
Vra3g0889 476 Coils Coil 173 193 - -
Vra3g0889 476 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 94 474 - -
Vra3g0889 476 Pfam PCRF domain 135 323 IPR005139 GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0889 Vra-Chr3 8965794 8969231 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0889 K02836 - gmx:100797427 785.408