Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0884 ATGGCAATGACATTTGAAACGGGTCGTTTTCACCTTTCGCGCCCAACGGCCTCAAAGCACTTGTTATTCTCGGCCATTATCAAACGACCAAAACCCGTTTCGCTTCCTTCTTCTCGGTTCTTCCATTGCCGATCGAGACGCCTCGTTTTGACGCAGAGATTCGCAGTGAAAGTCTGCGCGGTGAAAGTCGAGCAGAAGAACGTCGCTGCGGAATCAGGAGAGTGGGGGAAGGTTTCCGCGGTGCTCTTCGACATGGACGGCGTGCTTTGCAACAGCGAAGAGCCTTCTAGAAAAGCCGGCGTCGATTTGTTTGCCGAGATGGGCGTCGAAGTCACTGTCGACGATTTTGTGCCGTTTACGGGAACAGGAGAAGCTAACTTTTTGGGAGGTGTTGCTTCTGTTAAGGGAGTTAAAGGATTTGACCCAGAAGCTGCCAAAAAAAGGTTCTTTGAAATATATTTAGATAAGTATGCAAAACCAGATTCTGGAATTGGATTTCCGGGTGCCCTTGAACTCATTTCTCAGTGTAAAAGCAAAGGCCTTAAAGTGGCTGTTGCATCTAGTGCTGATCGTGTAAAGGTTGATGCAAATCTAGCTGCTGCTGGTTTACCATTGTCAATGTTCGATGCGATTGTCTCTGCAGATGCTTTCGAGAATTTGAAACCCGCTCCTGATATTTTCTTAGCCGCATCGAGAATATTGAATGTGCCCCCCAGTGAGTGTATTGTTATAGAAGATGCGCTAGCTGGAGTGCAGGCTGCCAAAGCTGCACAAATGAGATGCATAGCTGTAAGGACCTCAATATCAGATGCAGTTTTAGAATCTGCAGAGCCATCATTTATCCGGGATGACATAGGAAGTGTTTCACTTGAGGATATTCTCTTTGGTGGCACTGTTGGATATAATGAGAGGATGCAGGGCTCTGAAACTCTAAATAATTTTGCAGAGTCTTCATCTACTGTGCTTGATGGATGGTTGCAGGGTTCTCGGCGAGATATACTGAGATATGGAAGTCTGGGCATTGCTATCTCTTGCCTTATCTTCACCTTAAATAACTGGAAGGCAATGCAATATGCTTCTCCAAAAGCAGTTTGGAATCAGTTGTTTGGTGTTGCCCTGCCACCCTTGGAGCAGAAAGATAACTCAAGATATGATAGGATCCAGCAATTTGTGAACTACATTTCTGATCTGGAAAGCAGGGGAAATGCTCAGATAGTTCCAGAATTTCCATCTAAACTTGATTGGCTGAATACAGCTCCACTTCAGTTTCGCAGGGATCTGAAAGGAAAAATTGTTTTGCTGGATTTCTGGACTTATTGTTGTATAAACTGTATGCATGTGTTGCCAGACTTAGATGCTTTGGAGAAAAAATACAAAGATATGCCGTTTGTTGTCGTGGGTGTTCATTCTGCAAAGTTTGATAATGAGAAAGATTCTGAGGCCATTCGCAATGCAGTTTTACGCTATGGAATTTCTCACCCGGTTGTCAATGACGGAGACATGTTTCTTTGGAGGAACTTGGGTATAAGTTCATGGCCAACATTTGCTATAGTTGGCCCTGATGGTAAGCTTCTTGCACAACTAGCAGGAGAGGGTCACAGGAAGGATCTAGATGATTTTGTGGAGGCTGCCCTTCTATATTATGGAAAGCAGAACATGCTGGACAATACGCCAATTTCCTTGAGTTTGGAGAAAGATAATGATCCACGCCTGTTGACTTCTCCATTAAAGTTTCCAGGAAAGCTAGCAGTTGATGTCCTTAATAACAGGCTTTTTATTTCTGACAGCAACCATAATCGTATAGTGGTTACTGACCTTGATGGGAATTTTCTTGTACAAATCGGGAGCAGTGGGGAGGAAGGTTTGAATGACGGTTCTTTTGATGATGCTACTTTTAACCGTCCTCAGGGCCTTGCTTATAATGCAAAGAAAAACATCCTTTATGTTGCAGACACTGAAAACCATGCTCTGAGGGAAATTGATTTTGTTAATGAGAAAGTGAGGACCCTTGCTGGAAATGGGACCAAGGGCTCTGATTATGTTGGAGGTGGAAAAGGAGGCACACAGGTTCTCAATTCCCCTTGGGATGTCTGCTTTCATCCATTCGAAGAAACAATTTATATTGCCATGGCTGGCCAACATCAGATTTGGGAACACAATTTATTAGAGGCAACTTCCAGAGCATTTAGTGGTGATGGCTATGAAAGAAACTTAAATGGATCAAGTTCTACAAACACGTCATTTGCACAACCTTCTGGTCTTTCGTTGTCTCAAGATCTAAGCAAGATCTACATCGCTGATAGTGAGAGTAGTTCAATTCGAGTTGTGGATCTGAAAACAGGAGGATCACAGTTGTTAGCTGGTGGTGACCCAATGTTTGCTGACAATTTGTTTAAGTTTGGTGATCAAGATGGAATAGGCTCGGATGTACTTCTTCAACATCCATTGGGGGTTATGTGTGCAAATGATGGTGAAATTTATATCGCAGATAGCTACAATCACAAGATCAAGAAGCTGGATCCAACTAGTAAAAGAGTTAGCACCATTGCAGGAACTGGAAAAGCTGGTTTCAAAGATGGAACGGCTGTAAAAGCTCAGCTCTCTGAACCGGCAGGAATTGTTCAAGGGAACAAGGGGAGATTATTTATAGCTGACACAAACAACAGCTTAATTCGATATCTAGATTTAAACGCTGATGAAACTGAACTCCGTACCTTGGAGCTTAAAGGAATTCAGCCTCCTAAACCAAAATCAAGATCTTTTAAACGTCTTAGACGACGAGCATCAGCCGACACAGTGCCAATTCCGATTGATGCCATTTCATCAAATGAGGGAAACTTGTCTATTAAAATATCATTACCAAGCGAGTATCATTTCTCAAAGGAAGCCCGCAGTAAATTCAGCGTGGATATTGAACCTGAAGATGCTGTGAATATTGAACCCCTCGATGGATTCCTTAATCCAGAAGGATCTGCAACTCTTCACTTTAAGAGATTCTCTAACTCTGCTTCAGTGGGAAGAATTAATTGCAAGGTTTACTATTGCAAGGAAGATGAAGTTTGTTTGTACCAGTCTTTACTGTTTGAGGTCCCCTTCCCAGAGGGTGTTTCTAGCCCTGCCAAAGCAGACGTCACTCTCGCACATTTTGTAAAACCCAAAACTTCAACCAGCAACTTACTGGAGACAGTTGCCCCGTGA 3198 0.4318 MAMTFETGRFHLSRPTASKHLLFSAIIKRPKPVSLPSSRFFHCRSRRLVLTQRFAVKVCAVKVEQKNVAAESGEWGKVSAVLFDMDGVLCNSEEPSRKAGVDLFAEMGVEVTVDDFVPFTGTGEANFLGGVASVKGVKGFDPEAAKKRFFEIYLDKYAKPDSGIGFPGALELISQCKSKGLKVAVASSADRVKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAASRILNVPPSECIVIEDALAGVQAAKAAQMRCIAVRTSISDAVLESAEPSFIRDDIGSVSLEDILFGGTVGYNERMQGSETLNNFAESSSTVLDGWLQGSRRDILRYGSLGIAISCLIFTLNNWKAMQYASPKAVWNQLFGVALPPLEQKDNSRYDRIQQFVNYISDLESRGNAQIVPEFPSKLDWLNTAPLQFRRDLKGKIVLLDFWTYCCINCMHVLPDLDALEKKYKDMPFVVVGVHSAKFDNEKDSEAIRNAVLRYGISHPVVNDGDMFLWRNLGISSWPTFAIVGPDGKLLAQLAGEGHRKDLDDFVEAALLYYGKQNMLDNTPISLSLEKDNDPRLLTSPLKFPGKLAVDVLNNRLFISDSNHNRIVVTDLDGNFLVQIGSSGEEGLNDGSFDDATFNRPQGLAYNAKKNILYVADTENHALREIDFVNEKVRTLAGNGTKGSDYVGGGKGGTQVLNSPWDVCFHPFEETIYIAMAGQHQIWEHNLLEATSRAFSGDGYERNLNGSSSTNTSFAQPSGLSLSQDLSKIYIADSESSSIRVVDLKTGGSQLLAGGDPMFADNLFKFGDQDGIGSDVLLQHPLGVMCANDGEIYIADSYNHKIKKLDPTSKRVSTIAGTGKAGFKDGTAVKAQLSEPAGIVQGNKGRLFIADTNNSLIRYLDLNADETELRTLELKGIQPPKPKSRSFKRLRRRASADTVPIPIDAISSNEGNLSIKISLPSEYHFSKEARSKFSVDIEPEDAVNIEPLDGFLNPEGSATLHFKRFSNSASVGRINCKVYYCKEDEVCLYQSLLFEVPFPEGVSSPAKADVTLAHFVKPKTSTSNLLETVAP* 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0884 1065 PANTHER NHL REPEAT-CONTAINING PROTEIN 2 184 1063 - -
Vra3g0884 1065 SUPERFAMILY NHL repeat 570 897 - -
Vra3g0884 1065 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 206 264 IPR006439 -
Vra3g0884 1065 ProSiteProfiles NHL repeat profile. 812 842 IPR001258 GO:0005515
Vra3g0884 1065 SFLD Haloacid Dehalogenase 77 285 - -
Vra3g0884 1065 Gene3D - 791 894 IPR011042 -
Vra3g0884 1065 Gene3D - 549 718 IPR011042 -
Vra3g0884 1065 Pfam Haloacid dehalogenase-like hydrolase 81 264 IPR041492 -
Vra3g0884 1065 Gene3D Putative phosphatase; domain 2 91 162 IPR023198 -
Vra3g0884 1065 SMART LY_2 741 783 IPR000033 -
Vra3g0884 1065 SMART LY_2 569 611 IPR000033 -
Vra3g0884 1065 Pfam Thioredoxin-like 429 523 IPR012336 -
Vra3g0884 1065 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 77 285 - -
Vra3g0884 1065 CDD HAD_BPGM-like 80 266 - -
Vra3g0884 1065 Gene3D - 80 269 IPR023214 -
Vra3g0884 1065 CDD NHL-2_like 614 955 IPR045302 -
Vra3g0884 1065 Gene3D Glutaredoxin 377 548 - -
Vra3g0884 1065 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 78 89 IPR006439 -
Vra3g0884 1065 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 176 189 IPR006439 -
Vra3g0884 1065 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 208 224 IPR006439 -
Vra3g0884 1065 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 226 246 IPR006439 -
Vra3g0884 1065 ProSiteProfiles Thioredoxin domain profile. 400 546 IPR013766 -
Vra3g0884 1065 SUPERFAMILY HAD-like 74 292 IPR036412 -
Vra3g0884 1065 Pfam NHL repeat 632 657 IPR001258 GO:0005515
Vra3g0884 1065 SUPERFAMILY Thioredoxin-like 404 542 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0884 Vra-Chr3 8904675 8923379 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0884 - - gmx:100795843 1914.43