Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0881 ATGTCTCTGCGACCCAGTTCGAGCTCTGGTTCTCCTTCGAAGACAAGGAGAAAAATGTATAAGGGTGGAATTGACGCAGAAGAGAGTCGGAGAAGGAGGGAAAAAGACCTTGTCAGCATCAGAAAAATCAAACGCCAAACCACTCTTCTCAAGAAACGAGAAGAACCAGAAGAACGTACCTTTGATACGCTACTGGATGCTGTTCCTGAGATAGTGAAACGTATATGTGATGAGTATCCTCAGAGACAATTGGAGGCAACTGCTTACTTAAGAACTATTTTAACAATTGGTGACCCGGCCCCTCCACTTGATGACCTCGTTAAGCATGGTATCCTCCCTCGCTTTGTGGAGTTATTATCAAGGGACGATGAACCTAATTTGCAGGTACAAGTTCTGTGGGTTATATCCGATTTTGTTTTCACATCATACCAACACAAAAGTGCTGTGGTTGAAGTTGGTGTTGTTCCTTTCTTGGTCAATCTTGTCTCTAGTAGCCATGATGATATAAGAGAAGAGGCAATATGGATTTTAGGAAACATTGTTGGTGACTCCCCAGAATTTAGGGATCCTATTCTTAGCCATGGTGCTGTCATGCCATTACTATGTCAGTTGCAACCACATTCACCATTGCATATAATAAAGGCTGCTACGTTTACTTTATCTGTTTTGCTCCGTGGAATACCTCCAGTAGATTTTGAACTGGTAAAGATTGTCTTACCTGCTCTTCAGCGACTCCTCCATGAGACCGATGAAGATGTTTTAACAGATACATGCTGGACTTTAAATTACCTTTCGGAAGGTCCTATGGACAATGTTCAAGCTATTATTGAATTAGGAGTTTGCCCAAAACTTGTGCAACTTCTTCAGTTTCCATCAGATGAAGTTATTGTACCTGCACTTGGGGCTTTAGGAAATATTGCTGCTGCTGGTGAGGCTCATACACAGGCTGTGATCGATGCCAACATTATTCCTGCTCTTGTTAAAGTTGTCCGTAATGCTGAGTTTGAGGTGAAGAAGGAGGCTGTCTGCGCGATCTTCAATGTCACTTCTAAAGGATCTGATGAGAATATAAGGGTCCTTGCGGCTGAGGGTTGCATTGAGGCACTATGTGAACTCTTGACCTGTCCAGATCCAAAGCTGGTGAGAGTTTGTCTGGAGGGACTGGTGAACATTTTGGCATTTGGAGAAGCTAACAAGGATGAGAAAGGCAATGTTTTTGCTCAAAGGGTTGAGGAATGTGGAGGATTGGACAATATTGAAACATTGCACCTTCATGAGAACAATGACATTCATACCAGAGCTCTGTGGATTTCGGATTGCTTTCGAGCACAGAATGAGTTGGAAGATTCCAATATGAGCTTCAGCCTGCTTGATTTTTCACTCATACAACACTTACAAGAGTAA 1404 0.4266 MSLRPSSSSGSPSKTRRKMYKGGIDAEESRRRREKDLVSIRKIKRQTTLLKKREEPEERTFDTLLDAVPEIVKRICDEYPQRQLEATAYLRTILTIGDPAPPLDDLVKHGILPRFVELLSRDDEPNLQVQVLWVISDFVFTSYQHKSAVVEVGVVPFLVNLVSSSHDDIREEAIWILGNIVGDSPEFRDPILSHGAVMPLLCQLQPHSPLHIIKAATFTLSVLLRGIPPVDFELVKIVLPALQRLLHETDEDVLTDTCWTLNYLSEGPMDNVQAIIELGVCPKLVQLLQFPSDEVIVPALGALGNIAAAGEAHTQAVIDANIIPALVKVVRNAEFEVKKEAVCAIFNVTSKGSDENIRVLAAEGCIEALCELLTCPDPKLVRVCLEGLVNILAFGEANKDEKGNVFAQRVEECGGLDNIETLHLHENNDIHTRALWISDCFRAQNELEDSNMSFSLLDFSLIQHLQE* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0881 467 MobiDBLite consensus disorder prediction 1 35 - -
Vra3g0881 467 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 153 195 IPR000225 GO:0005515
Vra3g0881 467 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 279 307 IPR000225 GO:0005515
Vra3g0881 467 PANTHER IMPORTIN ALPHA 305 450 - -
Vra3g0881 467 PANTHER IMPORTIN ALPHA 3 319 - -
Vra3g0881 467 MobiDBLite consensus disorder prediction 1 15 - -
Vra3g0881 467 MobiDBLite consensus disorder prediction 18 35 - -
Vra3g0881 467 PIRSF Importin_alpha 301 456 IPR024931 GO:0005737|GO:0006606|GO:0061608
Vra3g0881 467 PIRSF Importin_alpha 6 308 IPR024931 GO:0005737|GO:0006606|GO:0061608
Vra3g0881 467 Pfam Armadillo/beta-catenin-like repeat 144 181 IPR000225 GO:0005515
Vra3g0881 467 Pfam Armadillo/beta-catenin-like repeat 270 308 IPR000225 GO:0005515
Vra3g0881 467 Pfam Armadillo/beta-catenin-like repeat 313 349 IPR000225 GO:0005515
Vra3g0881 467 Pfam Armadillo/beta-catenin-like repeat 103 136 IPR000225 GO:0005515
Vra3g0881 467 Pfam Armadillo/beta-catenin-like repeat 353 392 IPR000225 GO:0005515
Vra3g0881 467 SMART arm_5 98 140 IPR000225 GO:0005515
Vra3g0881 467 SMART arm_5 227 266 IPR000225 GO:0005515
Vra3g0881 467 SMART arm_5 184 225 IPR000225 GO:0005515
Vra3g0881 467 SMART arm_5 353 393 IPR000225 GO:0005515
Vra3g0881 467 SMART arm_5 142 182 IPR000225 GO:0005515
Vra3g0881 467 SMART arm_5 268 308 IPR000225 GO:0005515
Vra3g0881 467 SMART arm_5 310 350 IPR000225 GO:0005515
Vra3g0881 467 ProSiteProfiles IBB domain profile. 1 62 IPR002652 GO:0006606|GO:0061608
Vra3g0881 467 Gene3D - 65 441 IPR011989 -
Vra3g0881 467 Pfam Importin beta binding domain 16 87 IPR002652 GO:0006606|GO:0061608
Vra3g0881 467 SUPERFAMILY ARM repeat 14 440 IPR016024 -
Vra3g0881 467 Pfam Atypical Arm repeat 405 437 IPR032413 -
Vra3g0881 467 Gene3D - 15 54 IPR036975 GO:0006606
Vra3g0881 467 PANTHER IMPORTIN SUBUNIT ALPHA-4 3 319 - -
Vra3g0881 467 PANTHER IMPORTIN SUBUNIT ALPHA-4 305 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0881 Vra-Chr3 8887721 8890586 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0881 K15042 - gmx:100793195 437.958