Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0878 ATGGCAGACTTGGAAAACATGCTTCTTGAGGCAGCTGGAAGGACGAGTTCTCCGGTCAGAAAGCAGCACAAGTCTCGGAACTCGAAATCAAAACGTGAGGGTGGTGCGGCATTCTCCGATGGTGGAAGTCATTCTAGAGAAGAATACTCTGATGAGGGTGCAAACAAGAAACCACAGAGGTATTCATCCCATGTTCCACTGAAGAAGAGATTAGACGTCAGCAGAAGAAGTAGTAACAATAGTAATCGTAATGAGCATGGTGGGGGTGACTTGGAGGATGGTGTTCCTGATAGAGATGGTGGCAGCAGTGAAGAATCTGATGTTGGAAGTGATCTCTACAAGAACGAAGACGACAAACAGAAGCTCGCAAATATGACAGAACTCGAAAGGGAGATGATTTTGTCTGATAGAGCAACCAAAAAATGTGAAAAGGAATTCAAAGAGAAAATGAGATCGAAGAGGGAAAACAAAAATGCAAGTGCAAAGACTGGTTCTGCAGCAAATTCATCTTATCATCCATCATCTGCTAAGGTTCGTTCCTCGGCTAGAAATGCTGAGAAGACGGCTTCCAAGGGAGATGTTCTAAGTGAATTGCGCGCGAAAAGGATGAAGCAACAAATCTTAGACCCTCGTGATAAATTGGGAAAGGCTTCAGGATCAGGCTCAAATAGCAAGCAGAAACCTGGGGTCACGGCAAGTCCAAGTAGCTCTAGTCAGAGTGAGAGTGTTATTCGGTCTGACAGTGAAAGAGACTCGTCTGATGATGGTGGATTGGGTGACAGTGATGATGACAAGAACATTCATGAATCAAGGATGCCAACTTTCGAGAACATAAGGGAAATCACCATTAGGAGGTCAAAGCTCGTGAAGTGGTTGAATGAACCATTTTTTGAGGAGTTAATTGTTGGATGTTTTGTGAGAATTGGCATAGGAAAGTCAGAAAGGGGACCTGTTTACAGGCTCTGCACAGTGCAGAGAGTTGATGGAGGTGACCCAAATAAGCATTACAAGGTAGAGAATAGAGTCACTCACAAGTATCTAGTCTGTGTGTGGGGAAGTGAGAACTCTGCGAAAAAGTTTCAGGTGGCTGTAGTTTCAGATTCTGCACCCTTGGAGAGAGAGTTCAGACAGTGGGTTAGAGAAGTTGAAAGAACTTGCAGCCAAATGCCGAGTAAGATGAGTGTATTGGAGAAGAAGGAGGCCATAAGAAGAACAAGCGCTTATGTTTATTCAGCCGCTACTGTGAAGCAGATGCTAGAGGAGAAAAAATCAGCCCCATCTAGGCCACTGAACATTGCAGTGGAGAAGGATCGTTTGAAGAATCTGTTGGAGGTTGCAAAGTGTAAGAATGATGAAGCAGAGATGGATAGGATCTTGAGAAAGCTCGCGGATTTGGAAGCATCTCGTAAATCCCGGGAGAATGATGCCAAGGCTTTGAGGCTGGCTGAGATGAACAGGAAGAACAAGGTTGAGAACTTCAAGAACTTGTCTGAGCATAAACAGTTGAATGCCAATTTGAAAGCTGGTGAGGAAGGCTATGATCCCTTTTCGAGGAGGTGGACAAGGTCGAGGAATTACTACGGTAAAGATACTGAAAAGAATGAAGATAAAGGAGAAAAGGATGGTGAAGTTAGTAAGGGGGAAGAGAAAGAAGAAAGAGCTGTTACAACAAAGATTGGTGTTGAAGTCACTGAATTAGCATTGCAAGCAGCTGCTATTGAAGGGAAGTTGATTGATACCAATGCTCCTGTGGATGGTGGAACAGAATCATACATGCTGCATGATTTCGACTTGCCTATCTCTTTGGCTGAACTCAAGAATTTTGGTGGACCACAGGGACTCAAAAATGGATTTCTGTCAAGGAAACAAAAAATAGAAGAAACAGTTGGGTGCCGGGTTTCTGAGAATGATGGGAGTAGGCATGCACTTACATTAACTATCAGTGACTACAAGAGAAGAAGAGGACTTCTGTGA 1974 0.4387 MADLENMLLEAAGRTSSPVRKQHKSRNSKSKREGGAAFSDGGSHSREEYSDEGANKKPQRYSSHVPLKKRLDVSRRSSNNSNRNEHGGGDLEDGVPDRDGGSSEESDVGSDLYKNEDDKQKLANMTELEREMILSDRATKKCEKEFKEKMRSKRENKNASAKTGSAANSSYHPSSAKVRSSARNAEKTASKGDVLSELRAKRMKQQILDPRDKLGKASGSGSNSKQKPGVTASPSSSSQSESVIRSDSERDSSDDGGLGDSDDDKNIHESRMPTFENIREITIRRSKLVKWLNEPFFEELIVGCFVRIGIGKSERGPVYRLCTVQRVDGGDPNKHYKVENRVTHKYLVCVWGSENSAKKFQVAVVSDSAPLEREFRQWVREVERTCSQMPSKMSVLEKKEAIRRTSAYVYSAATVKQMLEEKKSAPSRPLNIAVEKDRLKNLLEVAKCKNDEAEMDRILRKLADLEASRKSRENDAKALRLAEMNRKNKVENFKNLSEHKQLNANLKAGEEGYDPFSRRWTRSRNYYGKDTEKNEDKGEKDGEVSKGEEKEERAVTTKIGVEVTELALQAAAIEGKLIDTNAPVDGGTESYMLHDFDLPISLAELKNFGGPQGLKNGFLSRKQKIEETVGCRVSENDGSRHALTLTISDYKRRRGLL* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0878 657 MobiDBLite consensus disorder prediction 217 243 - -
Vra3g0878 657 Pfam Plus-3 domain 277 382 IPR004343 GO:0003677
Vra3g0878 657 ProSiteProfiles Plus3 domain profile. 272 407 IPR004343 GO:0003677
Vra3g0878 657 MobiDBLite consensus disorder prediction 528 555 - -
Vra3g0878 657 MobiDBLite consensus disorder prediction 1 271 - -
Vra3g0878 657 MobiDBLite consensus disorder prediction 86 158 - -
Vra3g0878 657 Coils Coil 436 482 - -
Vra3g0878 657 PANTHER UNCHARACTERIZED 1 657 - -
Vra3g0878 657 MobiDBLite consensus disorder prediction 184 211 - -
Vra3g0878 657 MobiDBLite consensus disorder prediction 244 271 - -
Vra3g0878 657 PANTHER PLUS-3 DOMAIN PROTEIN 1 657 - -
Vra3g0878 657 MobiDBLite consensus disorder prediction 44 58 - -
Vra3g0878 657 MobiDBLite consensus disorder prediction 159 183 - -
Vra3g0878 657 Gene3D - 272 405 IPR036128 GO:0003677
Vra3g0878 657 SUPERFAMILY Plus3-like 274 403 IPR036128 GO:0003677
Vra3g0878 657 SMART rtf1 272 384 IPR004343 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0878 Vra-Chr3 8871721 8873831 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0878 K15178 - gmx:100793188 1024.23