Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0870 ATGGGTTGTGGCGGTCCATTCTCGCATCTCATTCTCACTGCAATCGCAATAGCAATAGCGATCCCATTGGCTGCCTGCGATACGCCTCCGGTGCTTTTCGTCTTCGGCGATTCCAACTCAGACACCGGTGGACTCGCTTCCGGACTTGGTTTCACTATCAATCTTCCCAATGGCCGCACTTTCTTCCGAAGATCCACAGGTCGCTTGTCCGATGGACGCCTGGTCATCGACCTTCTCTGCCAAAGTTTGAATGCAAGTTTGTTGGTACCATACTTGGACGCCTTGTCCGGAACCTCATTCACAAATGGAGCAAACTTTGCTGTGGTGGGGTCCTCTACTCTCCCTAAGTATGTTCCTTTCTCCTTAAATATACAGCTGATGCAATTCCGGCGTTTCAAAGCTCGTTCTCTTGAACTTGTTACGGCAGGTGCAAGAAATTTCATCAGTGACGAAGGCTTCCGCAATGCACTCTACTTGATTGATATTGGGCAAAATGACCTTGCTGATTCATTTGCCAAAAATCTGTCATACGCACAAGTGATTAAGAAGATCCCATCATTTATTACTGAGATTGAGAATGCTGTTAAGAATTTACATAACGAAGGGGCCAGGAAGTTTTGGGTTCACAATACTGGGCCATTGGGCTGTCTTCCTAAAATACTTGCACTGGCTCAGAAGAAGGATCTAGATTCATTGGGATGTCTTTCTAGTTATAACACTGCAGCACGATTGTTTAATGAAGCGCTGCTTCATTTGAGTCAGAAACTAAGATCTGAACTGAAGGATTCTACTTTAGTCTATGTTGATATTTATGGCATTAAGCATGACCTCATTACAAATGCCGCAAAATATGGTTTCTCAAATCCGTTGATGGTATGTTGCGGCTTTGGAGGGCCTCCTTACAACTTTGACGTAAGGGTAACATGTGGTCAACCTGGTTATCAGGTTTGTGACGAAGGGGCTCGATATGTAAGCTGGGATGGAATTCATCATACTGAAGCTGCAAATAAGTGGATAGCTTCTAAGATACTTTCCATGGCTTATACCACACCACGGACACCTTTTGATTTCTTTCGCCACTGA 1083 0.4469 MGCGGPFSHLILTAIAIAIAIPLAACDTPPVLFVFGDSNSDTGGLASGLGFTINLPNGRTFFRRSTGRLSDGRLVIDLLCQSLNASLLVPYLDALSGTSFTNGANFAVVGSSTLPKYVPFSLNIQLMQFRRFKARSLELVTAGARNFISDEGFRNALYLIDIGQNDLADSFAKNLSYAQVIKKIPSFITEIENAVKNLHNEGARKFWVHNTGPLGCLPKILALAQKKDLDSLGCLSSYNTAARLFNEALLHLSQKLRSELKDSTLVYVDIYGIKHDLITNAAKYGFSNPLMVCCGFGGPPYNFDVRVTCGQPGYQVCDEGARYVSWDGIHHTEAANKWIASKILSMAYTTPRTPFDFFRH* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0870 360 Pfam GDSL-like Lipase/Acylhydrolase 32 343 IPR001087 GO:0016788
Vra3g0870 360 SUPERFAMILY SGNH hydrolase 32 345 - -
Vra3g0870 360 PANTHER OS01G0329900 PROTEIN 14 358 - -
Vra3g0870 360 CDD SGNH_plant_lipase_like 30 345 IPR035669 -
Vra3g0870 360 Gene3D SGNH hydrolase 24 349 IPR036514 -
Vra3g0870 360 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 14 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0870 Vra-Chr3 8820599 8825034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0870 30 350 Acyl Lipid Metabolism Gene Families AT4G10950 26.023 1.52e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0870 - - gmx:100790553 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0870 3 8820599 8825034 Vra3g0870 3 8820599 8825034 ECH