Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0866 ATGAGTTTTATGATGATCTTGTGCATCAGTCTATACGTCAATTGCATTGATATTCCTGAAAAAAGAATATTTGCCCAAAGACCTAAAGATTTCATTAAACGAAATGGCACCCGTTTTTTTCTAAATGGGAAGCCACACTACTTCAACGGATTCAATGCATATTGGCTAATGACTTTTGCAGCCGACCCATCTACAAGTTCTAAGGTCACTGCAGTTTTTCAACAAGCTTCCCAACATGGTTTAAACTTAGCAAGAACCATGGCATTCAATGATGGAGGTTACAGAGCCCTTCAAACTTCACCTGGTATTTACGACGAGAATGTTTTCAGGGCATTGGATGCTGTGATATCAGAAGCAGGAAAGTATGGGATACGATTGATTCTAAGCCTGGTAAATAATTGGAAAGATTTGGGTGGAAAGAATCAGTATGTTCAATGGGCAAAACAACGTGGTCAGAACGTAAGCACTGAAGATGACTTCTTCTCTAACTCCATGACTAAGCAATTCTACAAAAATCATGTCAAGACAGTGCTCACAAGAAAAAACACAGTGACTGGATTATTCTACAAGGATGACCCCACCATTTTTTCGTGGGAGCTCATGAATGAACCTCGTTCTTCAGACTTTTCCGGGAAACAAGTTCAGGATTGGGTGAGTGAGATGGCTGCTTATGTGAAGTCCATTGACAACAAACACTTACTGCAAGTAGGGCTTGAAGGGTTTTATGGTAATTCAATGCCAGAAAGAGGACTGATCAATCCTGATGGATACCATACAGGAACCGATTTCATTTCTAACAACCTAGTTCCTGAAATCGATTTTTCTTCCATTCATGCTTACCCTGATGAATGGATGGCGCGGTTTAACCAATCACATCAAGATGTCTTCACTGAAAAATGGGTTAGCACGCATATTGAAGATGCAAAAAATGTTGTACGAAAGCCCATTCTTCTTACGGAGTTTGGGTTAAATAAAGCATTTCGAGGATACAGCAATGGTAAAAGGGACCGATTGTATGCAAAAGTTTACAAATGGGTATACGGCAGCGCTAGGCAGAGGGGAGCATGTGCTGGTTCAGCTTTTTGGCAACTATTTGTTGAAGGAATGGATAACATGGCTGATGGTTATGATATCATCTTTCAACGGAATCCTTCCACTGCCAAAATCATCGCCCAACAATCTTTAAGGATGTCTCGTATTCGATAG 1206 0.4046 MSFMMILCISLYVNCIDIPEKRIFAQRPKDFIKRNGTRFFLNGKPHYFNGFNAYWLMTFAADPSTSSKVTAVFQQASQHGLNLARTMAFNDGGYRALQTSPGIYDENVFRALDAVISEAGKYGIRLILSLVNNWKDLGGKNQYVQWAKQRGQNVSTEDDFFSNSMTKQFYKNHVKTVLTRKNTVTGLFYKDDPTIFSWELMNEPRSSDFSGKQVQDWVSEMAAYVKSIDNKHLLQVGLEGFYGNSMPERGLINPDGYHTGTDFISNNLVPEIDFSSIHAYPDEWMARFNQSHQDVFTEKWVSTHIEDAKNVVRKPILLTEFGLNKAFRGYSNGKRDRLYAKVYKWVYGSARQRGACAGSAFWQLFVEGMDNMADGYDIIFQRNPSTAKIIAQQSLRMSRIR* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0866 401 Pfam Cellulase (glycosyl hydrolase family 5) 43 330 IPR001547 GO:0004553|GO:0071704
Vra3g0866 401 SUPERFAMILY (Trans)glycosidases 30 380 IPR017853 -
Vra3g0866 401 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 1 3 400 - -
Vra3g0866 401 Gene3D Glycosidases 28 401 - -
Vra3g0866 401 PANTHER - 3 400 IPR045053 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0866 Vra-Chr3 8781772 8783404 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0866 1 401 Glycoside Hydrolase AT5G66460 51.493 1.70e-149 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0866 K19355 - gmx:100788081 547.354