Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0858 ATGGGGCAAAAGCATTTGGTGGTGGCCTTCTGTTTATGGGCATTAACATGTTCCCTTCTTCCATCTTTCTCCTACGGAATTCTGAAAATTGGTTTGAAGAAGAGACCTCTAGATCTTAATAGTATTAATGCTGCTAGAAAGGCAAGAGAAGGTTTAAGATCTGGAAGGCCAATTATGGGTGAGCATGATCAGTTTATTGGTAAGGCAAAGGGTGAAAACAGTGTACCTTTGAAAAATTATTTGGATGCTCAGTATTTTGGTGAGATTGGAATTGGCACACCCCCTCAGACCTTCACTGTTGTGTTTGATACTGGTAGTTCCAACCTTTGGGTTCCATCATCAAAATGCTACTTTTCTCTTGCTTGCTATACCCATAATTGGTATAAGCCAAAGAAATCCAGAACGTATGTCAAAAATGGAACATCATGTAAAATAAACTATGGATCTGGATCAATATCTGGTTACTTCAGTCAAGATAGTGTTAAAGTTGGCAACGCTATTGTCAAGCAGCTGGATTTCATTGAAGCTACCCGAGAAGGAAGTCTTTCCTTTCTGTCAGCAAAGTTCGATGGAATACTGGGACTTGGATTTCAGGAGATCTCAGTTGCAGATGCTGTTCCATTATGGTACAAAATGGTGGACCAAAATCTTATCAGTGAGAAGGTGTTTTCCTTTTGGTTGAATGGGGATCCAAATGCAAAAAAAGGCGGTGAATTAGTTTTCGGTGGTGTTAACCCAAAGCACTTTAAAGGAGACCACACTTATGTTCCAGTTACTGAAAAAGGTTACTGGCAGATTGAAATTGGAGATTTTTTCATTGGAGGTGCTTCTACAGGTGTTTGTGAGGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACTCCTGTTGTAGCTGAAATCAACCATGCTATTGGAGCTGAAGGAGTTCTCAGTGTAGAATGTAAGGATGTCGTTTCTCAATATGGAGAGATGATATGGGATCTCTTGGTATCAGGGGTGAAACCTGATGACATATGTTCCCAAGTTGGTTTATGTTCCGCCAAAAGGATTCAATCTAAGAGCCCTGGGATTGAAATGGTAACTGAAAAGGAACAGAGTGAGTTGACAGCAAGAGATACTCCCTTATGTTCTTCTTGTCAGATGCTTGTTCTTTGGATTCAGAATCAACTAAAACAAAAACAAACAAAGGACAGAGTATTCAACTATGTGAATCAACTGTGTGAGAGCTTGCCAAGTCCCTCTGGAGAGTCAGTGATAAGCTGTAACAGTCTTTCCAAGATGCCAAACATTACATTCACAATTGGAGATAAACCTTTTGTCCTTACACCAGAGCAGTATATTTTGAGAACTGGAGAAGGCATTACAGAAGTATGCCTTAGTGGGTTTATCGCTTTTGATGTTCCTCCTCCACGGGGTCCATTGTGGATTCTTGGGGATGTTTTCATGAGAGCATATCACACCATCTTTGACTATGGAAATCTCCGAGTTGGATTTGCTGAAGCTGTGTGA 1527 0.4086 MGQKHLVVAFCLWALTCSLLPSFSYGILKIGLKKRPLDLNSINAARKAREGLRSGRPIMGEHDQFIGKAKGENSVPLKNYLDAQYFGEIGIGTPPQTFTVVFDTGSSNLWVPSSKCYFSLACYTHNWYKPKKSRTYVKNGTSCKINYGSGSISGYFSQDSVKVGNAIVKQLDFIEATREGSLSFLSAKFDGILGLGFQEISVADAVPLWYKMVDQNLISEKVFSFWLNGDPNAKKGGELVFGGVNPKHFKGDHTYVPVTEKGYWQIEIGDFFIGGASTGVCEGGCAAIVDSGTSLLAGPTPVVAEINHAIGAEGVLSVECKDVVSQYGEMIWDLLVSGVKPDDICSQVGLCSAKRIQSKSPGIEMVTEKEQSELTARDTPLCSSCQMLVLWIQNQLKQKQTKDRVFNYVNQLCESLPSPSGESVISCNSLSKMPNITFTIGDKPFVLTPEQYILRTGEGITEVCLSGFIAFDVPPPRGPLWILGDVFMRAYHTIFDYGNLRVGFAEAV* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0858 508 SUPERFAMILY Acid proteases 16 507 IPR021109 -
Vra3g0858 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 287 298 IPR001969 GO:0004190|GO:0006508
Vra3g0858 508 Pfam Eukaryotic aspartyl protease 84 507 IPR033121 -
Vra3g0858 508 ProSiteProfiles Peptidase family A1 domain profile. 85 505 IPR033121 -
Vra3g0858 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190|GO:0006508
Vra3g0858 508 Pfam Saposin-like type B, region 2 319 351 IPR008138 -
Vra3g0858 508 CDD phytepsin 75 506 IPR033869 GO:0004190
Vra3g0858 508 Gene3D Acid Proteases 28 243 IPR021109 -
Vra3g0858 508 ProSiteProfiles Saposin B type domain profile. 315 355 IPR008139 -
Vra3g0858 508 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 3 508 IPR001461 GO:0004190|GO:0006508
Vra3g0858 508 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Vra3g0858 508 PRINTS Pepsin (A1) aspartic protease family signature 237 250 IPR001461 GO:0004190|GO:0006508
Vra3g0858 508 PRINTS Pepsin (A1) aspartic protease family signature 287 298 IPR001461 GO:0004190|GO:0006508
Vra3g0858 508 PRINTS Pepsin (A1) aspartic protease family signature 481 496 IPR001461 GO:0004190|GO:0006508
Vra3g0858 508 ProSiteProfiles Saposin B type domain profile. 378 419 IPR008139 -
Vra3g0858 508 Pfam Saposin-like type B, region 1 380 417 IPR007856 GO:0006629
Vra3g0858 508 SUPERFAMILY Saposin 316 417 IPR011001 -
Vra3g0858 508 Gene3D Acid Proteases 245 507 IPR021109 -
Vra3g0858 508 Gene3D - 315 417 - -
Vra3g0858 508 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 3 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0858 Vra-Chr3 8705312 8709770 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0858 K08245 - gmx:548009 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0858 3 8705312 8709770 Vra8g1418 8 31062353 31067281 PCT