Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0855 ATGATTATTATGAAACTTGCTTTGCTGATAAGAAGCAGCGGCAACCAAAATGGTGTTCCAAAATTGCACCGATTCTCCTCAGTTCCCGACATCAAACTTCACCTGGACAAGGCCGCAAATCTGAAGAACCTTAAACACGCGACGCAAATCCACTCGCAAATCGTAACGACCAATCAGACTTCCCTCGGCAACATCAACAGCCTCCTCGTGGTTTACGCAAAATGCGGTTCCATCAAGCACGCGGTCCTCTTGTTCGGCACAACCCCTGGCGCCTCATCCAGCGTGGTCACGTGGACCACACTCATAACCCAACTCTCCCATTTCAACAAACCCTTCCAAGCCCTCACTTCTTTCAACCTGATGCGAACCACCGGCATATACCCCAATCAGTTCACCTTCTCAGCCATCTTACCCGCCTGCGCTCACGCCACGCTCCTTTCACAGGGCCAACAAATCCACGCCTTGCTTCTCAAACACGCCTTCTACACCGACACTTTTGTTGCCACCGCTTTGCTCCACATGTACGCCTCATGTGGCTCCATGTCCTTCGCGGAGAATGTGTTCGACCAAATGCCCCACAGAAATCTCGTTTCCTGGAACTCCATGATTGTGGGGTTTGTTAAAAACAAAATGTACTGTCGTGCCATTGGGTTTTTTAGAGAGGTTCTTTCACTTGACCCCGACCAAGTTAGTTTCTCCAGCGTGTTGAGTGCTTGTGCTGGGTTGGTTGAGCTTGGGTTTGGGAAACAAGTTCATGGGAGCATTGTTAAGCGTGGTTTGGTGGGGTTGGTTTACGTGAAGAACTCGCTGGTAGACATGTATTGCAAATGCGGTTTGTTTGAGGATGCAACTAAGCTGTTCTGTGGTGGTGGAGACAGAGATGTTGTGACGTGGAATGTAATGATCATGGGATGTGTTCATAGCCAAAACTTCGAACAAGCTTGCACCTTTTTCCAGGCTATGATAAGGGAAGGCGTGGAACCGGACGAGGCTTCATACTCATCTCTCCTTCACGCTTCTGCAAGTATTGCTGCACTGGCACAAGGCAGCTTGATCCATTGTCATGTATTAAAAACCGGGCATGTGAAAAATGCCCGTGTTTCGAGTTCTTTGGTAACCATGTATGGAAAGTGTGGAAGTCTGTTTGATGCCTACTGTGTTTTTGGAGAAACTAAGGATTGCAATGTGGTTTGTTGGACTGCTATGATAACAGTTTGCCATCAACATGGTTGCGCAAATGAGGCAATCGAATTGTTTGAAGAGATGCTCAAGGAGGGGATTGCGCCAGAATACATAACTTTTGTTTCCGTGTTGTCGGCTTGCAGCCATACAGGGAAGGTTGATGATGGTTTTAAGTACTTCAATTCCATGGCTAATGTTCATAACATTGAACCAGGGCTTGAGCATTATGCTTGCATGGTTGACTTGCTTGGTCGCGTTGGTCGTTTGGAGGAAGCATGGAGGTTCATTGAATTGATGCCGATCGAGCCTGACTCGTCCGTTTGGGGGGCTTTTCTTGGGGCATGCGGAAAGCATGGCAATGTTGAAATGGGAAGAGAGGTTGCAGAGAGGCTTTTCAAGTTGGAACCAGATAATCCAGGAAACTACGTGCTGCTAGCGAATATCTATACTCGGCATGGGATGTTGGATGAAGCTGATGAAGTCAGAAGATTGATGGGGATCAATGGGGTGAGGAAAGAGACTGGGTGTAGCTGGATTGATGTTAAGAACAGAACCTTTGTGTTCAATGTGAATGATAAGTCTCATTCAAGGACACGAGAGATTTATGAAATGTTGCAGAAGTTGAAGGAATTGATGAAGAGGAGAGGGTATGTGGCTGACACTCAGTTTGCAACTAACAGCGTGGAAGGTTCTGAAGAGCAGAGTTTGTGGTGTCACAGTGAGAAATTAGCTCTTGCATTTGGACTTCTAGTCCTCCCACCTGGATCTCCGGTAAGGATAAAGAAGAATTTGAGGACCTGTGGTGATTGTCATACTGTTATGAAGTTTGCTTCAGAGATTTTTCAGAGAGAAATTATTGTGAGAGATATCAATAGGTTTCATCGATTCACAAATGGATCGTGCTCTTGTAGGGATTATTGGTGA 2106 0.4644 MIIMKLALLIRSSGNQNGVPKLHRFSSVPDIKLHLDKAANLKNLKHATQIHSQIVTTNQTSLGNINSLLVVYAKCGSIKHAVLLFGTTPGASSSVVTWTTLITQLSHFNKPFQALTSFNLMRTTGIYPNQFTFSAILPACAHATLLSQGQQIHALLLKHAFYTDTFVATALLHMYASCGSMSFAENVFDQMPHRNLVSWNSMIVGFVKNKMYCRAIGFFREVLSLDPDQVSFSSVLSACAGLVELGFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCVHSQNFEQACTFFQAMIREGVEPDEASYSSLLHASASIAALAQGSLIHCHVLKTGHVKNARVSSSLVTMYGKCGSLFDAYCVFGETKDCNVVCWTAMITVCHQHGCANEAIELFEEMLKEGIAPEYITFVSVLSACSHTGKVDDGFKYFNSMANVHNIEPGLEHYACMVDLLGRVGRLEEAWRFIELMPIEPDSSVWGAFLGACGKHGNVEMGREVAERLFKLEPDNPGNYVLLANIYTRHGMLDEADEVRRLMGINGVRKETGCSWIDVKNRTFVFNVNDKSHSRTREIYEMLQKLKELMKRRGYVADTQFATNSVEGSEEQSLWCHSEKLALAFGLLVLPPGSPVRIKKNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGSCSCRDYW* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0855 701 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 94 128 IPR002885 -
Vra3g0855 701 Gene3D Tetratricopeptide repeat domain 345 642 IPR011990 GO:0005515
Vra3g0855 701 Pfam PPR repeat 268 288 IPR002885 -
Vra3g0855 701 Pfam PPR repeat 470 493 IPR002885 -
Vra3g0855 701 Pfam PPR repeat 197 223 IPR002885 -
Vra3g0855 701 Pfam PPR repeat 169 195 IPR002885 -
Vra3g0855 701 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Vra3g0855 701 PANTHER OS07G0578800 PROTEIN-RELATED 19 694 IPR045215 GO:0003723|GO:0009451
Vra3g0855 701 TIGRFAM PPR: pentatricopeptide repeat domain 397 429 IPR002885 -
Vra3g0855 701 TIGRFAM PPR: pentatricopeptide repeat domain 470 493 IPR002885 -
Vra3g0855 701 TIGRFAM PPR: pentatricopeptide repeat domain 296 330 IPR002885 -
Vra3g0855 701 Pfam DYW family of nucleic acid deaminases 610 701 IPR032867 GO:0008270
Vra3g0855 701 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 395 429 IPR002885 -
Vra3g0855 701 Gene3D Tetratricopeptide repeat domain 150 245 IPR011990 GO:0005515
Vra3g0855 701 Gene3D Tetratricopeptide repeat domain 20 149 IPR011990 GO:0005515
Vra3g0855 701 Gene3D Tetratricopeptide repeat domain 248 344 IPR011990 GO:0005515
Vra3g0855 701 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 164 198 IPR002885 -
Vra3g0855 701 Pfam PPR repeat family 395 442 IPR002885 -
Vra3g0855 701 Pfam PPR repeat family 293 339 IPR002885 -
Vra3g0855 701 Pfam PPR repeat family 94 141 IPR002885 -
Vra3g0855 701 Pfam E motif 512 574 IPR046848 -
Vra3g0855 701 SUPERFAMILY TPR-like 200 554 IPR011990 GO:0005515
Vra3g0855 701 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 19 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0855 Vra-Chr3 8680295 8682524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0855 94 701 Glycoside Hydrolase AT3G49170 39.677 3.77e-159 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0855 - - gmx:100808394 1197.57