Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0842 ATGCTGCGTCTGAAAGCGTTTCGGCCTACGAGCGACAAAATCGTTAAGATCCAATTGCATCCGACGCATCCATGGATGGTTACGGCCGATGATTCAGATCGAGTTTCGGTTTGGAACTGGGAGCACCGCCAGGTGGTGTATGAGTTGAAAGCTGGTGGAGTGGACGAGCGGCGTTTGGTCGGCGCCAAGTTGGAGAAGCTGGCCGAGGGAGAAATAGAGTCTAAAGGGAAGCCTACCGAAGCCATTCGGGGAGGAAGTGTTAAGCAGGTGAATTTTTATGATGATGATGTACGCTTTTGGCAACTTTGGCATAATCGTTCTGCAGCTGCTGAGGCTCCAACAGCTGTCCACACTTCAGCTTTTAGCTCTCCTGCCCCATCAACAAGAGGGAGACATTTTCTTGTCATATGTTGTTTAAACAAAGCTATATTTTTGGACTTGGTGACCATGCGTAGCCGTGATGTACCAAAGCAAGAGCTTGATAACAAGTCCCTTCTTTGCATGGAGTTCCTTTATAGAACTGGTGTTGGTGATGGTCCTCTTGTTGCTTTTGGTTCATCGGATGGTGTCATTAGAGTTCTCTCAATGATGACATGGAAGCTTGTGCGAAGGTACACTGGAGGTCATAAAGGATCGATCTCTTGTTTGATGTCCTTCATGGCTGCTTCTGGCGAGGCTCTTTTGGTTTCGGGTGCTAGTGATGGATTGCTCATAATTTGGAGTGCTGACCACGGACAGGATTCACGGGAACTTGTACCCAAGCTGAGTTTAAAAGCACATGATGGCGGGGTTGTGGCAGTTGAGTTGTCTAGGGTAATGGGAGGTGCTCCTCAGCTAATCACAATTGGTGCAGATAAGACATTAGCCATATGGGACACTGTGTCCTTTAAGGAGCTGCGGCGGATAAAGCCAGTTCCCAAATTGGCTTGCCATAGTGTGGCTTCTTGGTGCCATCCTCGAGCTCCAAACCTTGATATTCTAACCTGCGTCAAAGATTCTCACATATGGGCAATCGAACATCCCACTTATTCTGCTCTCACGAGGCCATTGTGTGAATTGACCACAGTTATTCCTCCACAAGCCCTTTCTCCTAATAAGAAATTGAGGGTGTATTGTATGGTTACACATAATTTGCAGCCACATCTAGTTGCTACAGGAACCAACATTGGTGTTATCATCTGTGAGTTTGATGCTAGATCTCTTCCACCTGTTGCTCCTCTACCAACACCAGCAGACAGTAGAGAGCATTCTGCCGTATTTGTAATTGAAAGAGAATTGAAGCTATTAAATTTTCAGTTAAACAACTCTGCAAATCCATCTCTTGGAAATAACAGCTCCTTGTCAGAAACAGGAAGACCCAAGGGAGACTTTTTTGAACCATTATCTGTCAAGCAGGGGAAAAAACACATTAGTACTCCTGTTCCACATGATTCGTACTCAGTTCTTTCTGTCAGCAGTTCAGGAAAGTATCTAGCAATTGTTTGGCCAGATATTCCTTATTTCTCTGTCTACAAGGTTAGTGATTGGTCAATTGTTGACTCTGGAAGTGCAAGGCTTCTGGCATGGGATACTTGTCGTGACAGATTTGCTATATTGGAATCAGCATTACCTCCTAGAATTCCTATAATGCCCAAGGGTAGTTCATCAAAAAGAGCCAAAGAAGCTGCTGCGGCACAAGCAGCAGCAGCAGCAGCAGCTGCTGCTTCCACAGCTTCTGTTCAAGTCCGCATCTTGTTAGATGATGGTACATCAAATATACTAATGAGGTCTGTTGGTGCACGCAATGAACCAGTCATTGGTTTGCGTGGAGGAGCACTGCTTGGTGTTGCCTATCGAACATCTAGGAGAGTCAGTCCTATTGCTGCCACCGCTATTTCAACAATCCAGTCTATGCCCTTATCAGGCTATGGAAGCAGTGGTCTTTCTTCTTTTACTACTTATGATGATGGATTTTCTTCAAATAGACCTCCAACCGCAGCAGCACCTCAAAACTTCCAGCTATACAGTTGGGAGACATTCCAGCCAGTGGGGGACCTTCTTCCTCAGCCAGAATGGACTGCTTGGGACCAAACCGTTGAGTACTGTGCATTTGGATACCAGCAATACATAGTCATATCTTCTTTGCGCCCTCAATATAGATATTTGGGAGATGTTGCAATCCCATATGCTACTAGTGCTGTTTGGCACAGGAGGCAGCTGTTTGTGGCTACCCCAACTACTATTGAAATCGTTTTTGTGGATGCTGGGGTTGCTCAAATTGACATTGAAACTAAGAAGATGAAAGAAGAGCAGAAAATGAAAGAAGCACAGGCAAAAGCTGTTGCTGAGCACGGAGAGTTAGCTCTAATTACTGTAGAAGGTCCTCAGTCTGCTAAGGAAGAAAGAATAGCATTAAGGCCGCCAATGTTGCAGGTGGTTCGGTTGGCTTCATTTCAGCATGCTCCTTCAGTGCCACCTTTCTTATCATTACCAAAACAATCTAGAGTTGATGGTGATGACTCTTGGTCGGCAACAGAAGAGAGAAAGACAGGTGAGGTGGCAGTTGGTGGTGGGGGTGTGGCTGTGGCAGTTACCCGTTTTCCAATGGAGCAGAAACGTCCAGTTGGGCCTCTTGTAGTTGTAGGTGTCAGGGATGGAGTTCTTTGGCTAATTGACAGGTACATGTGTGCTCATGCCTTATCCTTGAGTCATCCTGGAATTCGCTGCCGATGCCTTGCAGCTTATGGAGACGCTGTTAGTGCAGTAAAATGGGCAAGTAGACTTGGAAGAGAACACCACGATGATTTAGCACAATTTCTGTTAGGAATGGGCTATGCTACTGAAGCACTTCATTTGCCTGGAATATCAAAGAGGTTGGAGTTTGATTTGGCCATGAAGAGCAATGATTTGAAAAGAGCTCTTCATTGTCTTCTTACCATGAGTAACAGCCGGGATATAGGACAAGATGATACTCCTGGTCTTGGTTTGAATGACATTCTTAATTTATCAGATAAAAAACAAGAGAAAATATCAGATAAAAAAAAAGATATGGTTGACGGTGTTCAGGGTATCGTGAAATTTGCAAAAGAGTTCTTGGATCTTATTGATGCCGCAGATGCTACTGCACAGAGTGATATTGCGCGTGAGGCTCTGAAGAGGTTAGCTGCAGCAGGTTCAGTGAAAGGTGCTTTAGAAGGTCATGAATTGAGAGGGTTAGCATTACGTCTTGCAAATCATGGAGAGTTGACACGTCTAAGTGGTTTGGTTAACAATTTAGTCACGCTTGGCTTGGGAAGGGAAGCAGCATTTGCTGCTGCTGTTTTGGGTGACAATGCTCTGATGGAGAAAGCATGGCAGGATACAGGAATGCTGGCAGAGGCTGTGCTTCATGCTCATGCACATGGACGGCCAACTTTGAAGAACTTAGTGCAGGCTTGGAACCAAGCATTACAGAGAGAGATTGAACCTACCCCATCTCAGAAGACAGATGCTGCAGCTGCGTTTTTAGCTTCTCTTGAGGAGCCTAAGCTCACAAGTTTGGCAGATGCTGGGAAGAAAGCACTTATTGAAATCCTGCCTCCGGGGATGATGTCTCTTAATGCTCCTATTTCCATCCAGAAAAAACCAGCTTCTTCTGCACAGAACTCCCAACAACCCCCAGACAAGCTATTGGCACTGGAAGCACCTCCTACAACCACAGCTGCACCAGAGAGTGCTACTCAGCAGCCTGAATCCACACCGGCGTCAGTTAGTGAGCCACCTCCATTAGAGTCTACCTCAGAGTCCACGCCAGCTCATGTAGCTGCTCCACCTCAACCAGAATCAGGTGAAACGACCGTAGCTGATGGGGTTCCTTCCACTGGACCAGCTAGTGACGAAGGTCCAAATGTTAATGGTGAAACTGGTCAAGCAGAAACGTCTACAGGCAATCCAGCACTCCCAGAGGTTCTCCCACCTACAGTAGCAGCAGAGGTTTCGGAGACTTCTACTCCAAGTATAGCTGCAGTTCCTACAACAACTACAGTTCCTACAACACCTACGGTTCCGGCAAATGATCCCTTTATATGA 4047 0.4606 MLRLKAFRPTSDKIVKIQLHPTHPWMVTADDSDRVSVWNWEHRQVVYELKAGGVDERRLVGAKLEKLAEGEIESKGKPTEAIRGGSVKQVNFYDDDVRFWQLWHNRSAAAEAPTAVHTSAFSSPAPSTRGRHFLVICCLNKAIFLDLVTMRSRDVPKQELDNKSLLCMEFLYRTGVGDGPLVAFGSSDGVIRVLSMMTWKLVRRYTGGHKGSISCLMSFMAASGEALLVSGASDGLLIIWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGAPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELTTVIPPQALSPNKKLRVYCMVTHNLQPHLVATGTNIGVIICEFDARSLPPVAPLPTPADSREHSAVFVIERELKLLNFQLNNSANPSLGNNSSLSETGRPKGDFFEPLSVKQGKKHISTPVPHDSYSVLSVSSSGKYLAIVWPDIPYFSVYKVSDWSIVDSGSARLLAWDTCRDRFAILESALPPRIPIMPKGSSSKRAKEAAAAQAAAAAAAAASTASVQVRILLDDGTSNILMRSVGARNEPVIGLRGGALLGVAYRTSRRVSPIAATAISTIQSMPLSGYGSSGLSSFTTYDDGFSSNRPPTAAAPQNFQLYSWETFQPVGDLLPQPEWTAWDQTVEYCAFGYQQYIVISSLRPQYRYLGDVAIPYATSAVWHRRQLFVATPTTIEIVFVDAGVAQIDIETKKMKEEQKMKEAQAKAVAEHGELALITVEGPQSAKEERIALRPPMLQVVRLASFQHAPSVPPFLSLPKQSRVDGDDSWSATEERKTGEVAVGGGGVAVAVTRFPMEQKRPVGPLVVVGVRDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDAVSAVKWASRLGREHHDDLAQFLLGMGYATEALHLPGISKRLEFDLAMKSNDLKRALHCLLTMSNSRDIGQDDTPGLGLNDILNLSDKKQEKISDKKKDMVDGVQGIVKFAKEFLDLIDAADATAQSDIAREALKRLAAAGSVKGALEGHELRGLALRLANHGELTRLSGLVNNLVTLGLGREAAFAAAVLGDNALMEKAWQDTGMLAEAVLHAHAHGRPTLKNLVQAWNQALQREIEPTPSQKTDAAAAFLASLEEPKLTSLADAGKKALIEILPPGMMSLNAPISIQKKPASSAQNSQQPPDKLLALEAPPTTTAAPESATQQPESTPASVSEPPPLESTSESTPAHVAAPPQPESGETTVADGVPSTGPASDEGPNVNGETGQAETSTGNPALPEVLPPTVAAEVSETSTPSIAAVPTTTTVPTTPTVPANDPFI* 1349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0842 1348 SUPERFAMILY WD40 repeat-like 7 316 IPR036322 GO:0005515
Vra3g0842 1348 SMART WD40_4 1 39 IPR001680 GO:0005515
Vra3g0842 1348 SMART WD40_4 250 292 IPR001680 GO:0005515
Vra3g0842 1348 SMART WD40_4 198 241 IPR001680 GO:0005515
Vra3g0842 1348 MobiDBLite consensus disorder prediction 1226 1259 - -
Vra3g0842 1348 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 301 IPR001680 GO:0005515
Vra3g0842 1348 PANTHER TSET COMPLEX MEMBER TSTF 1 1188 - -
Vra3g0842 1348 MobiDBLite consensus disorder prediction 1272 1303 - -
Vra3g0842 1348 MobiDBLite consensus disorder prediction 1223 1348 - -
Vra3g0842 1348 MobiDBLite consensus disorder prediction 1316 1341 - -
Vra3g0842 1348 Gene3D - 903 1160 - -
Vra3g0842 1348 Gene3D - 3 350 IPR015943 GO:0005515
Vra3g0842 1348 Coils Coil 752 772 - -
Vra3g0842 1348 PANTHER TSET COMPLEX MEMBER TSTF 1 1188 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0842 - - gmx:100786844 2331.6