Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0841 ATGGCTTTAACTGGGCTCCCCCTAGCAACCTTCTTCCTCCTTCTCTCCGCTTCTTATCTCCAGATTGCTGGGGCGGAAGTTGAGTCGTCGACTGTTCTCAATCTTAACTCTCCAATTCTTAAGAAATCTATTGCTCAACAGGTTAACGAAAATCCTGAGGCAGGATGGGAGGCTGACATAAATCCTCGTTTCTCCAATTATACAGTTAAACAATTTAAGCGCCTCCTTGGAGCTAAACAAACGCCTAAGACCGTACTCGGAAGTGTACCTGTTATTTCTCATCCAAAATCATTGAAGTTGCCGGTGAATTTTGATGCAAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGATCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTAGAATCATTGTCAGATCGCTTTTGCATTCATTTTGATGTTAATATTTCTCTCTCTGTTAATGACCTTCTCGCATGCTGTGGCTTTCTGTGTGGATCTGGGTGTGATGGGGGATATCCCATTTACGCATGGCGATACTTAGCCCACCATGGTGTTGTCACTGAAGAGTGCGACCCATATTTTGATCAAACTGGCTGTTCTCATCCTGGATGTGAGCCAGCTTATCGGACTCCCAAGTGTGTTAAAAAGTGTGTAAGTGGGAACCAGCTGTGGAAGAAGTCAAAGCACTACAGTGTCAATGCCTACAAGGTCAACTCTAATCCCCATGACATCATGGCAGAAGTGTACAAAAATGGGCCAGTTGAGGTCGCATTTACTGTTTATGAGGATTTTGCTCACTACAAGTCAGGAGTTTACAAACACGTCACAGGTTATGTACTCGGCGGTCATGCAGTGAAGCTAATTGGGTGGGGAACAACTGATGATGGGGTTGACTATTGGCTTCTCGCAAATCAGTGGAACAGAGAATGGGGAGATGATGGTTACTTCAAGATCCGAAGGGGGACAAACGAATGCGGGATTGAAGAGGAGGTAACTGCTGGTTTGCCTTCTACCAAAAACCTCGTAAGAGAGGTGATTGATATGGATGATGGCGCTGCTGTTTCATTCTGA 1071 0.4528 MALTGLPLATFFLLLSASYLQIAGAEVESSTVLNLNSPILKKSIAQQVNENPEAGWEADINPRFSNYTVKQFKRLLGAKQTPKTVLGSVPVISHPKSLKLPVNFDARTAWSQCSTIGRILDQGHCGSCWAFGAVESLSDRFCIHFDVNISLSVNDLLACCGFLCGSGCDGGYPIYAWRYLAHHGVVTEECDPYFDQTGCSHPGCEPAYRTPKCVKKCVSGNQLWKKSKHYSVNAYKVNSNPHDIMAEVYKNGPVEVAFTVYEDFAHYKSGVYKHVTGYVLGGHAVKLIGWGTTDDGVDYWLLANQWNREWGDDGYFKIRRGTNECGIEEEVTAGLPSTKNLVREVIDMDDGAAVSF* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0841 356 SUPERFAMILY Cysteine proteinases 46 336 IPR038765 -
Vra3g0841 356 CDD Peptidase_C1A_CathepsinB 101 334 - -
Vra3g0841 356 PRINTS Papain cysteine protease (C1) family signature 122 137 IPR000668 GO:0006508|GO:0008234
Vra3g0841 356 PRINTS Papain cysteine protease (C1) family signature 283 293 IPR000668 GO:0006508|GO:0008234
Vra3g0841 356 PRINTS Papain cysteine protease (C1) family signature 299 305 IPR000668 GO:0006508|GO:0008234
Vra3g0841 356 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 18 342 - -
Vra3g0841 356 Pfam Papain family cysteine protease 100 334 IPR000668 GO:0006508|GO:0008234
Vra3g0841 356 Pfam Peptidase family C1 propeptide 41 82 IPR012599 GO:0004197|GO:0050790
Vra3g0841 356 Gene3D Cysteine proteinases 33 342 - -
Vra3g0841 356 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 281 291 IPR025660 -
Vra3g0841 356 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 122 133 IPR000169 -
Vra3g0841 356 PANTHER CATHEPSIN B-LIKE PROTEASE 3 18 342 - -
Vra3g0841 356 SMART pept_c1 100 335 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0841 Vra-Chr3 8540939 8546881 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0841 K01363 - gmx:100788988 675.626