Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0838 ATGGGTTGGGAAGGAGGTCTCAAAAGCATGGTGTTGATGGGTGCTTTTATGGTAGCCATGGTGGCTGTTCAAAATGTGGTGTGCGAGGAAGGTGTTGATCATCGTGACTCAGCACGCAATTTAGTTCAGAACGGTGGCTTCGTTCGACGAAGCGGCACCAACTTTGTTCTGAACAACAAGCGTTTCTACTTCAACGGATTCAATGCTTACTGGTTAATGTTAATGGCATCTGACCCAGCAACGAGGCCCAAGGTCACTTCCGTTTTGCAACAAGCTTCCAGCCATGGCTTAACCGTTGCCAGAACTTGGGCTTTCAACGATGGAGCTTACAGAGCCCTTCAGGTTTCTCCTGGTTCGTACGACGAGAAAGTATTCAGGGGATTGGACTTTGTGATATCAGAAGCGGGAAAAAATGGTGTACGATTGATACTGAGCTTGGTGAACAACTGGAAAGATTTTGGTGGGAAAAATCAGTACGTGGAATGGGTGAAGCAGCATGGTGAGTACGTGAACACTGAAGATGATTTCTTTACGCATCCTTTGGCCAAACAACACTTCAAAAACCATATCAAGGCTGTGCTGACGAGAAAAAACACAGTAAGTGGGGTGGCATATAAGGACGATCCTGCCATATTTGCATGGGAACTTATGAACGAACCCCGTTGCCAACACGACAACTCCGGAAAAGTTGTTCAGGAATGGGTGATTGAGATGGCTGCATACGTCAAATCCATCGATAGCAATCATTTGCTTGAAATAGGACTCGAAGGGTTCTATGGTGAAGATAAAAAACAAATCAATCCTGGGTACCAACTTATTGGCACTGATTTCATTTCTAACAACCTAGTTCATCATGTCGATTTTGCCACCATGCATCTCTACCCTGAACAATGGCTGCCAGGCTCAAATGAAGCTGCTCAGGTTGCATTCGTTGACGAGTGGCTACAAAAGCACATTGAGGATTCGAAAAATGTTCTTGGGAAGCCTATTGTCGTTGGTGAATTTGGGAAGTCATGTAGGTCATACAGTGTGGCTGAAAGGGATAGTTACTTGAGCAAAATGTATAATGCAATATACAGTAATGCTATCAGTGGGGGACCCTGTGCTGGAGGGCTTTTTTGGCAGCTCATGGCTCAAGGAATGGACAATTTCTATGATGGTTATGAAATTGTCTTCCAGAACAGTCCTTCAACCACCAGAATTATTGATCAACAATCCCACAAAATGTCAAGTATTGCTTAG 1242 0.4444 MGWEGGLKSMVLMGAFMVAMVAVQNVVCEEGVDHRDSARNLVQNGGFVRRSGTNFVLNNKRFYFNGFNAYWLMLMASDPATRPKVTSVLQQASSHGLTVARTWAFNDGAYRALQVSPGSYDEKVFRGLDFVISEAGKNGVRLILSLVNNWKDFGGKNQYVEWVKQHGEYVNTEDDFFTHPLAKQHFKNHIKAVLTRKNTVSGVAYKDDPAIFAWELMNEPRCQHDNSGKVVQEWVIEMAAYVKSIDSNHLLEIGLEGFYGEDKKQINPGYQLIGTDFISNNLVHHVDFATMHLYPEQWLPGSNEAAQVAFVDEWLQKHIEDSKNVLGKPIVVGEFGKSCRSYSVAERDSYLSKMYNAIYSNAISGGPCAGGLFWQLMAQGMDNFYDGYEIVFQNSPSTTRIIDQQSHKMSSIA* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0838 413 PANTHER - 21 412 IPR045053 GO:0004553
Vra3g0838 413 Gene3D Glycosidases 43 413 - -
Vra3g0838 413 Pfam Cellulase (glycosyl hydrolase family 5) 65 362 IPR001547 GO:0004553|GO:0071704
Vra3g0838 413 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 1 21 412 - -
Vra3g0838 413 SUPERFAMILY (Trans)glycosidases 47 403 IPR017853 -
Vra3g0838 413 Coils Coil 413 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0838 Vra-Chr3 8513711 8517141 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0838 10 412 Glycoside Hydrolase AT5G66460 52.941 2.31e-154 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0838 K19355 - gmx:100787923 729.169