Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0826 ATGAAATCTTCATTCTTTTCCGTATTATTTTTCTCTTTTGCTATTCTCTGCTGCTCTGCACCTTTTGGAGCTGAAGCATGGTTGAAGCCCAAAATACCCATCTCTTCTCTCATCACAAAAACTCTTTTTGACTCATTTTTCCTACACAAAGATGACACTGCATGCCCTGCAAAAGACTTCTACACCTACCACTCCTTCATTCTTGCATCAAAATCCTTCCCTGCATTTGGTACCACTGGTTGTTTAGCCACGCGCAAGCGTGAGATTGCTGCGTTTCTCGCTCAGATTTCCCATGAAACCACCGGTGGGTGGGCCACCGCACCCGATGGCCCATTTGCTTGGGGCTTGTGCTTCAAGGAAGAAATTAGTCCTCAGAGTAATTACTGTGATTCCACTAACACTCAATGGCCATGCTTCCCTGCAAAAAGTTACAAGGGAAGAGGACCGATTCAACTTTCTTGGAACTACAACTATGGACCGGCAGGGAAGGCGTTGGGATTTGATGGGTTGAGGAATCCGGACATCGTGGCGAACAATTCCGTGATAGCCTTCAAAACTGGGCTCTGGTTTTGGATGACAGAGCAAAAGCCAAAACCTTCTTGCCACGACGTGATGGTTGGGAAATACCTGCCTACAGAAGCTGACATAGCGGCTAATCGAACATCTGGTTATGGCTTGGTCACTAACATAATCAACGGTAAACTTGAATGTGGGATTCCTGATGATGCAAGAGTCAATGATCGGATTGGTTTTTTCCAAAGATATACAAAGCTGTTCAACGTCGACACTGGACCTAACTTGGATTGTGCATATCAGCAACCCTTCTAA 828 0.4541 MKSSFFSVLFFSFAILCCSAPFGAEAWLKPKIPISSLITKTLFDSFFLHKDDTACPAKDFYTYHSFILASKSFPAFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKEEISPQSNYCDSTNTQWPCFPAKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPDIVANNSVIAFKTGLWFWMTEQKPKPSCHDVMVGKYLPTEADIAANRTSGYGLVTNIINGKLECGIPDDARVNDRIGFFQRYTKLFNVDTGPNLDCAYQQPF* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0826 275 Gene3D Endochitinase, domain 2 120 178 - -
Vra3g0826 275 ProSitePatterns Chitinases family 19 signature 2. 182 192 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vra3g0826 275 Pfam Chitinase class I 37 269 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vra3g0826 275 Gene3D - 41 275 - -
Vra3g0826 275 PANTHER CHITINASE-RELATED 26 275 - -
Vra3g0826 275 PIRSF Endochitinase 11 275 IPR016283 GO:0004568|GO:0005975
Vra3g0826 275 PANTHER OS05G0138200 PROTEIN 26 275 - -
Vra3g0826 275 CDD chitinase_GH19 38 269 - -
Vra3g0826 275 SUPERFAMILY Lysozyme-like 34 275 IPR023346 -
Vra3g0826 275 ProSitePatterns Chitinases family 19 signature 1. 55 77 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0826 Vra-Chr3 8402412 8403511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0826 33 275 Glycoside Hydrolase AT4G01700 74.074 8.28e-144 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0826 - - gmx:100784196 503.442