Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0824 ATGAGCACACCTTCAACACGCGTGGAAGTGCTTCTGGTACTTGCATTGCTCAGTTGTAGCCCGGGAATAGTGTGGAGCAACACACTTTGCCAACAGACAAACGACCAAGTTCGACCTCACAGCGTCAGCATCACCGAATTTGGTGCAGTTGGTGATGGAGTCACTCTCAACACAAAAGCATTTCAAAATGCCATCTTCTACCTGAATTCCTTTGCTGACAAAGGTGGAGCCAAGCTTTTTGTCCCGGCTGGTCGATGGTTAACCGGTAGTTTTGATCTCATCAGTCATCTGACTTTGTGGTTGGACAAGGATGCAGTAATTCTCGGATCAACGAATCCTGAAGATTGGCCAGTTGTTGATCCTCTACCGTCGTATGGAAGAGGAAGAGAGTTGCCAGGTAGAAGGCATAAAAGCCTCGTTTATGGGCGCAATTTGACTGATGTGATAATAACAGGTAATAATGGGACTATCGATGGTCAAGGGAGTATCTGGTGGAGCATGTTTAGGAACAATACTCTGGATTATACACGTCCCCATTTGATAGAATTGATAAACTCAACAGGGGTCCTCATTTCAAATTTAACCTTGTTGAATTCTCCATTTTGGACAGTCCATCCTGTGTATTGCAGCCATGTTACAGTTCAGAAAGTGGCGATCTTTGCTCCTCTTGATTCTCCAAATACCGATGGGATTGATCCGGATTCTTCTGACAACGTTTGCATTGAGGACTGTTACATAAGCACTGGTGATGATCTCATTGCAATCAAGAGCGGGTGGGATGAGTATGGCATTGCGTACAGTCGCCCGTGCACAAACATTGTCATCCACAGGCTTGTTGGTAAAACTCAAACGAGTGCAGGGATTGCAATAGGAAGTGAGATGTCTGGTGGTGTATCTGAAGTTCATGTAGAAGATGTTCAATTCTACGATTCAAATACTGCAATCAGAATAAAGACTTCTCCTGGAAGGGGTGGTTATGTCAGAAACATCTATGTCTCAAATGTGACCTTGACTAATGTAGATATTGCTATTAGATTCACTGGTTTATATGGGGAACATCCAGATGATGCTTATGATCCAAATGCTCTGCCTGTAATAGAAAAGATTACAATCAAGGATGTGGTGGGGGAGAATATCAAAACTGCAGGTCTTATAGAGGGTATAGAAGGTGACAATTTTGTCAACGTTTGCCTATCAAACATTGTCCTTAATGTGAGCTCAAACTATCCATGGAACTGCTCCTATGTTAAAGGATATTCCGACTTGGTTCTGCCAGAAGCTTGTGAGCCTCTCAAAGAAAGGATTTTTCCTGAGCATTGTTCAGATTGTTACTATATGTCAAATCAAATTCAGAGTTCGAAAAGCCAAAATAGAGCAGGGCAAAGAAACTTCAGGTGA 1398 0.4285 MSTPSTRVEVLLVLALLSCSPGIVWSNTLCQQTNDQVRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNPEDWPVVDPLPSYGRGRELPGRRHKSLVYGRNLTDVIITGNNGTIDGQGSIWWSMFRNNTLDYTRPHLIELINSTGVLISNLTLLNSPFWTVHPVYCSHVTVQKVAIFAPLDSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIAYSRPCTNIVIHRLVGKTQTSAGIAIGSEMSGGVSEVHVEDVQFYDSNTAIRIKTSPGRGGYVRNIYVSNVTLTNVDIAIRFTGLYGEHPDDAYDPNALPVIEKITIKDVVGENIKTAGLIEGIEGDNFVNVCLSNIVLNVSSNYPWNCSYVKGYSDLVLPEACEPLKERIFPEHCSDCYYMSNQIQSSKSQNRAGQRNFR* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0824 465 Gene3D - 25 418 IPR012334 -
Vra3g0824 465 Pfam Glycosyl hydrolases family 28 138 417 IPR000743 GO:0004650|GO:0005975
Vra3g0824 465 PANTHER OS07G0245200 PROTEIN 7 447 - -
Vra3g0824 465 PANTHER PECTIN LYASE-RELATED 7 447 - -
Vra3g0824 465 SMART pbh1 236 268 IPR006626 -
Vra3g0824 465 SMART pbh1 327 348 IPR006626 -
Vra3g0824 465 SMART pbh1 270 292 IPR006626 -
Vra3g0824 465 SMART pbh1 298 319 IPR006626 -
Vra3g0824 465 SMART pbh1 209 235 IPR006626 -
Vra3g0824 465 SUPERFAMILY Pectin lyase-like 33 431 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0824 Vra-Chr3 8373617 8377230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0824 10 459 Glycoside Hydrolase AT3G62110 67.974 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0824 - - gmx:100782602 847.04