Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0820 ATGGCTAACCCAACACAACCTAATGTTGGGTTCACCCCTGAGAGAGAGAGTGCAACCCCTGAGAAGAATCCCATTCCGCTCCCTCCTAATTTTGTACCGTCAGCACCTGGTTTTTCTCCACCAAAACTGCCCTCACAGCAAGATCAAGCTTCTTCCCGTTCCGTTAAAACCCCTAACGTTCTATCACCAGCCAATGGGGTTACCACTGGCAGTTCTGTTCCTCACTTAAGCATCCCTCCTGGGCCGCCGGTGTTTACGTCGCCTGTCCGTCCAGCTTCGGTTCCTTTTCGAACATCGCCTGCATCGCCTCAGCCTGTTGCATTTTCTTCAGTTTCTTCTTTGCCAACGTCAACGTCATCATCGCCACTGCAATTTTCAAATGGATCGTTTGATTTGCAGCATCAACTTTCCGATAGTATAGACGACAATGTTCCCGTTGGAGAGTCATCATTTGTTCTTTTTTCAGCTCGTAAGGTACTGAAACAGAAGAAACAAGCTAATGTGCCCAGTTTGGGTTTTGGGGCATTGGTCTCTCCTGGGAGGGAGGTTTCCATGGGCCCCCAGGTAATACAGCGTGATCCTCATCGTTGCCAAAGCTGTGGTGCTTATGCAAATATATATTGCAACATATTACTTGGATCAGGCCAGTGGCAGTGTGTTATATGTAGGAAATTGAATGGAAGTGATGGGGAGTACATTGCACATAGCAAGGAAGATCTACGCAGATTTCTGGAATTATCTTCAACCATGTTTGATTATGCTCAAAATGAGAACAAGAGACCAGGTTTTGTTCCAGTTTCTGATTCTAGAATGTCTGCACCAATTGTTCTTGTTATAGATGAATGTTTAGATGAACCTCATCTACACCATCTACAGAGTTCTTTGCATGCTTTTGTTGATTCCCTCCCGCCAACAACGAGATTAGGAATTGTACTATATGGTCGGACTGTTTCAGTGTATGACCTTTCAGAAGAGTCAATGGCATCTGCTGATGTGCTGCCCGGGGAGAAATCACCTAGTCAAGAATCTTTGAAAGCTTTAATTTATGGTACTGGCATATACTTGTCACCAATGCATGCTTCACTAGCTGTAGCACATTCTATATTTTCATCATTGAGGGCATACAAGTTAAATATAGCAGAAGCTTCTCGTGACCGATGCTTAGGAACTGCAGTTGAGGTTGCTCTTGCTATTATTCAGGGCCCATCTGCCGATCTGTCCAGGGGGGTGGTCAAAAGGTCAGGGGGAAATAGTAGAATTATTGTCTGTGCTGGTGGACCGAACACTTATGGGCCTGGATCTGTCCCTCATTCTTTTAGTCATCCTAATTATCCTTACAGGGAAAAGATTGCAATTAAGTGGATGGAAAATCTTGGTCGTGAGGCTCATCGGCACAATACTATAATTGATGTTTTATGTGCTGGAACATGCCCTGTAAGAGTGCCGATCTTACATCCTCTTGCAAAAGCATCAGGTGGAGTTTTTGTTCTCCATGATGATTTTGGGGAAGCTTTTGGTGTTAATTTGCAAAGGGCATCTGCCAGATCAGCGGGCTCTCATGGTTTGTTAGAGTTGCGTACATCAGATAATATTGTCATTACTCAAGTCATTGGCCCAGGGGAAGAGTCACATGTCGATACCCATGAAACATTTAAAAATGATACTGCCCTTTATATTCAAATGCTAAGTGTTGAGGAAACCCAAAGTTTCTCTCTCTCCATGGAAACTGAAGGAGATATTAAAAGTGATTTTGTCTTTTTCCAATTTGCAATTCAATATTCAAATGTGTATCAAGCTGATGTGTCGAGGGTCATTACTGTTAGGTTGCCAACAGTAGATAGTATTTCGGCATATCTTGAGAGTGTTCAGGACGAAGTGGCCTCTGTCCTCATTGCAAAAAGAACCCTGTTACGAGCCATAAACCATTCTGATGCAATTGATATGCGAAAAACAATAGATGAAAGAATCAAGGATATTGCTCTAAAATTTGGTTCCCAATTACCCAAGTCAAAACTTCACAGCTTCCCGAAGGAGCTTGCTCTCTTACCAGAGCTCCTTTTCCATCTCAGGAGAGGACCACTCTTGGGAAGCATTATTGGCCATGAAGATGAGAGGTCTGTGCTGAGGAATTTGTTTCTGAATGCATCCTTTGATCTATCACTCAGAATGGTAGCTCCCCGTTGTTTAATGCACAGGGAAGGGGGAACTTTTGAGGAGCTACCAGCATATGATCTTGCTATGCAGTCTGATGCTGCTGTTGTACTTGACCATGGCACTGATGTCTTCATTTGGTTGGGTGCCGAACTTGCAGCTGATGAAGGAAGAAGTGCTGCTGCTCTAGCCGCATGTAGGACATTGGCAGAAGAGCTGACTGAGTGCCGTTTTCCAGCTCCTCGCATCCTTGCATTTAAGGAGGGTAGCTCCCAGGCTCGATATTTTGTTTCTCGTCTCATCCCAGCGCACAAGGATCCTCCTTATGAGCAGGAGGCAAGATTCCCACAGCTCAGGTCGTTGACATCAGAACAGCGTACAAAACTGAAAGCCAGTTTTGTTCATTTCGATGATCCTAGTTTTTGTGAATGGATGCGAAGCTTGAAAGTGGTGCCACCTCAACCAAGCTGA 2622 0.4443 MANPTQPNVGFTPERESATPEKNPIPLPPNFVPSAPGFSPPKLPSQQDQASSRSVKTPNVLSPANGVTTGSSVPHLSIPPGPPVFTSPVRPASVPFRTSPASPQPVAFSSVSSLPTSTSSSPLQFSNGSFDLQHQLSDSIDDNVPVGESSFVLFSARKVLKQKKQANVPSLGFGALVSPGREVSMGPQVIQRDPHRCQSCGAYANIYCNILLGSGQWQCVICRKLNGSDGEYIAHSKEDLRRFLELSSTMFDYAQNENKRPGFVPVSDSRMSAPIVLVIDECLDEPHLHHLQSSLHAFVDSLPPTTRLGIVLYGRTVSVYDLSEESMASADVLPGEKSPSQESLKALIYGTGIYLSPMHASLAVAHSIFSSLRAYKLNIAEASRDRCLGTAVEVALAIIQGPSADLSRGVVKRSGGNSRIIVCAGGPNTYGPGSVPHSFSHPNYPYREKIAIKWMENLGREAHRHNTIIDVLCAGTCPVRVPILHPLAKASGGVFVLHDDFGEAFGVNLQRASARSAGSHGLLELRTSDNIVITQVIGPGEESHVDTHETFKNDTALYIQMLSVEETQSFSLSMETEGDIKSDFVFFQFAIQYSNVYQADVSRVITVRLPTVDSISAYLESVQDEVASVLIAKRTLLRAINHSDAIDMRKTIDERIKDIALKFGSQLPKSKLHSFPKELALLPELLFHLRRGPLLGSIIGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHREGGTFEELPAYDLAMQSDAAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELTECRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRSLTSEQRTKLKASFVHFDDPSFCEWMRSLKVVPPQPS* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0820 873 MobiDBLite consensus disorder prediction 41 75 - -
Vra3g0820 873 Pfam Sec23/Sec24 zinc finger 194 232 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vra3g0820 873 Gene3D Severin 740 835 IPR029006 -
Vra3g0820 873 Pfam Sec23/Sec24 helical domain 625 721 IPR006900 GO:0006886|GO:0006888|GO:0030127
Vra3g0820 873 SUPERFAMILY Helical domain of Sec23/24 624 724 IPR036175 GO:0006886|GO:0006888|GO:0030127
Vra3g0820 873 Gene3D - 184 247 - -
Vra3g0820 873 MobiDBLite consensus disorder prediction 1 79 - -
Vra3g0820 873 SUPERFAMILY vWA-like 275 507 IPR036465 -
Vra3g0820 873 SUPERFAMILY beta-sandwich domain of Sec23/24 23 622 - -
Vra3g0820 873 MobiDBLite consensus disorder prediction 22 40 - -
Vra3g0820 873 CDD gelsolin_like 726 817 - -
Vra3g0820 873 CDD trunk_domain 268 511 - -
Vra3g0820 873 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 58 873 - -
Vra3g0820 873 Pfam Sec23/Sec24 trunk domain 276 502 IPR006896 GO:0006886|GO:0006888|GO:0030127
Vra3g0820 873 Pfam Sec23/Sec24 beta-sandwich domain 520 611 IPR012990 -
Vra3g0820 873 Gene3D von Willebrand factor, type A domain 274 519 IPR036465 -
Vra3g0820 873 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 726 866 IPR036180 -
Vra3g0820 873 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 58 873 IPR037364 -
Vra3g0820 873 Gene3D Sec23/Sec24 helical domain 612 732 - -
Vra3g0820 873 SUPERFAMILY Zn-finger domain of Sec23/24 188 257 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0820 - - gmx:100781518 1616.67