Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0816 ATGTCTTTTCTCATAACCATAAAGCAATGCGAATTCATTGTCAATAAAACAAGAAATACAGAAATGTTCCAATTGTTGTCCCGGACACCATGCTTCTGCCCACGCAACATGTGTACGGTTACATCCGCAAAGCTGAATTACATGATCGACGCTCACATACAAGACAACAACATAAACCAGGCTCGCAAACTGTTTGACGATAATCCCTCATCCCGCAACCTTGTTTCCTGGAACATGATGATGACTGGCCACGTCAAACATTATCAAATTGAACATGCACACAAGCTGTTTGATCAAATGCCCCTTAAAGACACAGTTTCCTGGAATATCATGCTCTCTGGTTTTAGTAGAATCACGGACTCTGATGGGTTGTACCGCCATTTCTTGCAAATGGGAAGATCATGTGTTGCCCCGGATGACTATACCATATCCACATTCCTCAGAGCAGTTATAAGTACTAAGTTGGATGTTTTGGTCCCCCAGGTGCATGCTCTAGCGCTTCATTTGGCACTTAACTTGAGTGTGTTTGTTGGTTCTTCGTTGATCAGAGCATATGCGAATTTAAGAGAGGAAGAGGCTTTTAAGCGCGTGTTTGATGATATATTGGTGAAAGATGTTACATCTTGGAATGCTTTAGTTTCTGGTTATATGGAAGTGGGAAGCATGGATGATGCACAAACAAACTTTGATGTGATGCCCCAAAGGAACATAATTTCGTGGACTACTTTGGTGAATGGTTATATCAGGAACAAGAAGATAAACAAAGCAAGGTCTGTTTTTAACAAAATGAGTGAGAGAAATGTGGTGTCTTGGACGGTAATGATTAGTGGGTATGTGCAAAATATGAGATTTATTGATGCACTGAACCTTTTTCTTCTGATGTTGAAGTCAGGAACTCGTCCCAATCATTTCACGTTTTCAAGTGTGTTGGACGCATGTGCTGGTTGTTCCTCTCTTTTGACGGGAATGCAGGTGCACCTGTGGGTTATCAAGTCTGGCATACCAGATGATGTCATCTCGTTGACCTCGCTTGTGGATATGTATGCTAAATGTGGAGATACGGATGCAGCATTTCTTGTTTTCGAGTCCATTCCGAAAAAGAATCTGGTGTCATGGAATTCAATAATTGGCGGCTTTGCTAGTAACGGGCATGGTAACCGAGCACTAGAGGAGTTTGATCGGATGAAAAAAGTTGGTGTTAAACCAGATGAAGTTACTTTTGTAAATGTGTTGTCAGCGTGTGTGCATGCCGGTCTTGTTGAAGAAGGGGAAAAGCACTTCAAATCTATGCTATCCAAGTATGGAATCGAAGCAGAGATGGAACACTGTACTTGCATGGTGGACCTCTACGGAAGAGCAGGGCAATTTGATAAAGCAGTAAAACTGATCGAAAATATGCCATTTGAGCCTGACGTGGTATTGTGGGGTGCGCTGCTTGCAGCTTGTGGCCTGCATTCAAATTTAGAACTTGGAGAGTATGCTGCAGATAGGATTCGCAAACTGGAAAGCAAACATCCTGTTTCTTACTCAATTCTTTCAAAGATCCAAGGTGAGAAAGGAATATGGAGCAGTGTAAATGAACTTAGGGAGTTGATGAGCAAGAAACAAATCAGAAAGCAGAAGGCAAGTAGTTGGGTTCTGTAA 1644 0.4203 MSFLITIKQCEFIVNKTRNTEMFQLLSRTPCFCPRNMCTVTSAKLNYMIDAHIQDNNINQARKLFDDNPSSRNLVSWNMMMTGHVKHYQIEHAHKLFDQMPLKDTVSWNIMLSGFSRITDSDGLYRHFLQMGRSCVAPDDYTISTFLRAVISTKLDVLVPQVHALALHLALNLSVFVGSSLIRAYANLREEEAFKRVFDDILVKDVTSWNALVSGYMEVGSMDDAQTNFDVMPQRNIISWTTLVNGYIRNKKINKARSVFNKMSERNVVSWTVMISGYVQNMRFIDALNLFLLMLKSGTRPNHFTFSSVLDACAGCSSLLTGMQVHLWVIKSGIPDDVISLTSLVDMYAKCGDTDAAFLVFESIPKKNLVSWNSIIGGFASNGHGNRALEEFDRMKKVGVKPDEVTFVNVLSACVHAGLVEEGEKHFKSMLSKYGIEAEMEHCTCMVDLYGRAGQFDKAVKLIENMPFEPDVVLWGALLAACGLHSNLELGEYAADRIRKLESKHPVSYSILSKIQGEKGIWSSVNELRELMSKKQIRKQKASSWVL* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0816 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Vra3g0816 547 Pfam E motif 485 546 IPR046848 -
Vra3g0816 547 Pfam PPR repeat 208 236 IPR002885 -
Vra3g0816 547 Pfam PPR repeat 75 101 IPR002885 -
Vra3g0816 547 Pfam PPR repeat 443 466 IPR002885 -
Vra3g0816 547 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 36 545 - -
Vra3g0816 547 Pfam PPR repeat family 367 415 IPR002885 -
Vra3g0816 547 Pfam PPR repeat family 266 314 IPR002885 -
Vra3g0816 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 235 IPR002885 -
Vra3g0816 547 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 36 545 - -
Vra3g0816 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 73 107 IPR002885 -
Vra3g0816 547 Gene3D Tetratricopeptide repeat domain 18 161 IPR011990 GO:0005515
Vra3g0816 547 Gene3D Tetratricopeptide repeat domain 234 319 IPR011990 GO:0005515
Vra3g0816 547 Gene3D Tetratricopeptide repeat domain 162 233 IPR011990 GO:0005515
Vra3g0816 547 Gene3D Tetratricopeptide repeat domain 382 546 IPR011990 GO:0005515
Vra3g0816 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 266 IPR002885 -
Vra3g0816 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Vra3g0816 547 TIGRFAM PPR: pentatricopeptide repeat domain 443 466 IPR002885 -
Vra3g0816 547 TIGRFAM PPR: pentatricopeptide repeat domain 370 404 IPR002885 -
Vra3g0816 547 TIGRFAM PPR: pentatricopeptide repeat domain 75 100 IPR002885 -
Vra3g0816 547 TIGRFAM PPR: pentatricopeptide repeat domain 238 269 IPR002885 -
Vra3g0816 547 TIGRFAM PPR: pentatricopeptide repeat domain 269 302 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0816 Vra-Chr3 8307474 8309669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0816 90 546 Glycoside Hydrolase AT3G49170 32.535 4.57e-84 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0816 - - pvu:PHAVU_001G217700g 992.26