Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0806 ATGGATTCGGCGAACGGAGCAATGGCTGTGAGAGACCAAAGCTTAACGGAATGGCGCATGCACCGTGGTCCCTACCTGGGAGACATTTCAGCTCTGTGTTTTCTCCACCTTCCAAATCTCTCTCTCCCTTTTCTGCTCGCGGGTTTGGGTTCTGAAATTGCGGTCTATGATTTGGAGCTGAGTAAGAGAATAAGGTCCTTCTCCGTATTCGAAGGAGTTCGCGTCCACGGAATCGCTTCTAGTTTCCCTCGCGGGACCATGATTGCTGTGTTTGGGGAAACCAGAGTGAAGCTGTTTAGCTTCGAATTTGATGCCGTTTCTGGGAGCGCAGAGCTGACGCTAGCTCATTTGTTGCCGAAGTTTGGCCACTGGGTTTTGGATGTTTGCTTCCTCGAGGGATGCTTACCTCATTCCAATGTGGAGGGTCATTTTCTTGCTGTCGGATGTAGTGATAATTCAGTTCATGTTTGGGATTTTTCTAACTCCATTGCGGTCCTTAAGGTTCAATCTCCAGTACGGTGCCTTCTGTACTCAATGCGATTATGGGGTCACAATCTTGAAGTCCTCCGAATAGCTTCTGGTACTATATTTAATGAGATTATTGTTTGGAAAGTGACCCATCAACACAATAAATCTTCGAGTCATCAAGAAAACCATGATCAACAGAGCCTTTCATCTTCTGTTTGCTGCCAGCTAAAGGATAAACAGTTTGAGGCTACTCATGTATGTAAACTTATTGGACATGAAGGTTCAATCTTCCGAATAGCATGGTCATCTTGTGGATCTAAACTGGTATCTGTCTCTGATGATCGGAGTGCACGTGTTTGGGCTGTTTCTATTGAAGGGGAACATGCATTGTGCCACAATTCCACTCCCCTTGTCTTATTTGGACATAATGCTCGGGTTTGGGACTGCTCTATTTCTGATAATTTGTTTGTCACTGTTAGTGAGGATTGTACATGTCGTATTTGGGGAGTGGACGGTAAACAACTGCAAGTCATTAAGGAGCACATTGGAAGAGGTATATGGAGATGTTTGTATGACCCAAATTCATCACTGCTTATAACTGCTGGGTTTGACTCTGCTATTAAAGTACATAAACCTCATGCATCTCTGCCCATGGGCTTGGAAGCAGTACAAGGATCCCCTTGTAGTACAGAGTTGTTTTCGATTTGCACACCTAATGTGTCAGAGCATATTGGATTTATGGACAGCAAGAGTGAATATGTTCGATGTTTGCGCTTTTCCTGTCAGGATTCTCTTTATGTTGCCACCAATCAGGGTTATCTCTACCATGCTAAATTATGTGATACTGGAGGTGCTCAGTGGAATCAACTTGTCCAGGTCAGCAATGGGGCACCAATTATCTGTATGGATTTATTGTCCAAGGACTCTGTTGAACATGACTGTGGTGCTGAGGATTGGATTGCTATCGGAGATGGTAAAGGAAATATGACAATTATTGAGGTTACCAAGGATGATTGCACTCCTATAGTGAGATTGTGCTTTACTTGGCCAGCTGAAACGGAGAGACAGCTCTTGGGTACTTATTGGTGCAAATCTCTGGGATGTAGGTATGTCTTCACAGCTGATCCTAGAGGAACATTGAAACTCTGGAGATTGCCTGACCCTTCACAATCTGATCTTCAGAGCTCCACGAGCAGTAACAAATTATCACTTATAGCAGAGTTCATATCAAATTATGGAATGCGGATAATGTGTTTGGATGCATGCATGGAGGAAGAGGTTTTAGCATGCGGTGATGTGCGGGGTAATATGGTTTTGTTCCCTTTGCTAAAGAATCTGGTCCTGAGCATATCTGGTGCAGAAGAAAGGAAGATACCTCCAGTAAATTATTTCAAAGGAGTTCATGGGATTTCAAGTGTCTCCAGTGTTTCTGTGACTAAGCTTGGTTATAATCAGATAGAGATACGCTCAACTGGAGCAGATGGTTGCATATGTTATCTGGAATATGACAAAGAAATGCATAATTTGCAATTTACGGGAATGAAACAAGTTAAAGAATTGTCTTTGATTGAGTATGTTTCTGTGGATAACAAGTCTGGTGATAGATTGTCAAGCAGCTATGCAGCTGGTTTTGCATCTGTGGATTTCATAGTATGGAACTTAGTGAACGAAAATAAGGTGGTGAACATTCCATGTGGTGGATGGCGACGTCCTCATTCCTATTATTTGGGTGATATACCAGAGATGAAGAACTGCTTTGCCTTTGTCAAGGATGAATTGATACATATACATAGACAATGGATTCATAATAGAGATGGGAAGGTTTACCCTCAAAATTTACACACGCAATTCCATGGTAGAGAGATACATTCCTTGTGCTTTATCTCTGAAGATGTGGTAGTTGGAGATAATTTCAAGTGCACCTTATTTTCTAAATCAAGTTGGATTGCAACTGGGTGTGAGGATGGAACTGTGAGGTTGACTTGGTACTCTCCGGGCACTGAAAATTGGTCCATGTCAAAACTGCTTGGAGAACATGTTGGAGGGTCAGCAGTGAGATCAATTTGTTGTGTGTCGAAAGTACACACTATTTCATCAGATATGGGTGATGTACCTCATGGGAGGATTGAACTGAATGCTGCGGTTGAAAAAAAGGATAATCCAACATTACTCATATCAGTGGGTGCAAAGCGTGTCTTAACCTCTTGGTTATTAAAAAATACGAGGCTGGACATAAAAAATGACTTCGTAATCAATCATCAACACAAATCAGAAGGAGATGATGACTGTTTTTTGTCAAGTTTGTCCTCATCAATGACGTTCCAGTGGCTGTCTACTGATATGCCAGCCAAATATTCAATTACACGCGATACTCCCAAAAATAATGTGCAGAAGATAGTTGGTGTTGCAGAAAATGTTTCTCATACAAATAATGATGCTGGATTGATTTCTGAGAGTGGAATGGCAAACTTGATCAGAGATAAACATGAAGATGACTGGAGATATCTTGCAGTCACAGCTTTTCTTGTTAGATGTTCCGGTTCCAGGATATCTGTTTGTTTTGTTGTTGTTGCATGTTCAGATGCTACACTTATGTTACGGGCTTTAGTTTTACCCTTTCGCTTGTGGTTTGATGTCGCTTTACTAGTTCCTTTATTGGCACCAGTTTTGTCATTGCAGCATATCATATTTCCCCTGTGTAGGCCTTGTGAAGAAAACATCCAAGCTGGAAATGTTTATATTGTGATTAGTGGGTCTACTGATGGCAGTGTTGCTTTTTGGGACCTAACTGACAGTGTTGAAGCTTTTATGCAACGGGTTTCAGTTTGTAATGTCGAAAAGCTTTTTGATTGTCAAAAGCGACCACGCACGGGGAGAGGAAGTCAGGGTGGTAGGCAGTGGAGGTCATTACGCAGAGACTTGTCAAAGAAACGACAAGAAAGCAGTCTGGTCACTTTGAAAGCCAAAGAGAAGACCGAAAAGGGGACCCCTTACGTGCCAAGTGATTCTGAAGGCAGCAGGACGGGTTGTTCTCAATCCACACATATGACTCTCCTTGAGTTAGAAAGCAAGACTGATAATTCCTCGACGGAAATATGTGAAATACAGCCTCTATGCCTGCAAAAGATTCACCAATCTGGTGTCAACTGTCTCCATGTTTCAGAGATAAAGAGTGGGCAAAATACTGACTGTTGTGAAATGTACAGCATAGTTAGTGGGGGTGATGATCAAGCACTTAATCATCTAATGGTTGAATTATCACCTAAATCAATAAATTTAAGTGACGGGATTTTGTGCCCTGAGATCACTCATATTGCCTCTGTGCCTGAATATGGAAAGGACTTCAACTTTAAAAATATGAGCAAGAAATTTAAGATTAGATTCTTAAATAACGAAAAATTACCCTCTGCCCACAGCGCTTCCGTCAAAGGTGTCTGGACAGACGGATCCTGGGTGTTTTCCACTGGACTTGATCAGCGGGTCAGATGCTGGCGTCTTCAGCGGAATAAACTAATAGAGCATTCATATCTTATAGTTAGTGTTCCAGAGCCAGAAGCGTTATCTGCTAGGGCTTGTGGCAGGAACCAATATCAAATTGCTGTCGCGGGAAGAGGAATGCAAATAATTGATTTTTCTGAATCTTGA 4113 0.4209 MDSANGAMAVRDQSLTEWRMHRGPYLGDISALCFLHLPNLSLPFLLAGLGSEIAVYDLELSKRIRSFSVFEGVRVHGIASSFPRGTMIAVFGETRVKLFSFEFDAVSGSAELTLAHLLPKFGHWVLDVCFLEGCLPHSNVEGHFLAVGCSDNSVHVWDFSNSIAVLKVQSPVRCLLYSMRLWGHNLEVLRIASGTIFNEIIVWKVTHQHNKSSSHQENHDQQSLSSSVCCQLKDKQFEATHVCKLIGHEGSIFRIAWSSCGSKLVSVSDDRSARVWAVSIEGEHALCHNSTPLVLFGHNARVWDCSISDNLFVTVSEDCTCRIWGVDGKQLQVIKEHIGRGIWRCLYDPNSSLLITAGFDSAIKVHKPHASLPMGLEAVQGSPCSTELFSICTPNVSEHIGFMDSKSEYVRCLRFSCQDSLYVATNQGYLYHAKLCDTGGAQWNQLVQVSNGAPIICMDLLSKDSVEHDCGAEDWIAIGDGKGNMTIIEVTKDDCTPIVRLCFTWPAETERQLLGTYWCKSLGCRYVFTADPRGTLKLWRLPDPSQSDLQSSTSSNKLSLIAEFISNYGMRIMCLDACMEEEVLACGDVRGNMVLFPLLKNLVLSISGAEERKIPPVNYFKGVHGISSVSSVSVTKLGYNQIEIRSTGADGCICYLEYDKEMHNLQFTGMKQVKELSLIEYVSVDNKSGDRLSSSYAAGFASVDFIVWNLVNENKVVNIPCGGWRRPHSYYLGDIPEMKNCFAFVKDELIHIHRQWIHNRDGKVYPQNLHTQFHGREIHSLCFISEDVVVGDNFKCTLFSKSSWIATGCEDGTVRLTWYSPGTENWSMSKLLGEHVGGSAVRSICCVSKVHTISSDMGDVPHGRIELNAAVEKKDNPTLLISVGAKRVLTSWLLKNTRLDIKNDFVINHQHKSEGDDDCFLSSLSSSMTFQWLSTDMPAKYSITRDTPKNNVQKIVGVAENVSHTNNDAGLISESGMANLIRDKHEDDWRYLAVTAFLVRCSGSRISVCFVVVACSDATLMLRALVLPFRLWFDVALLVPLLAPVLSLQHIIFPLCRPCEENIQAGNVYIVISGSTDGSVAFWDLTDSVEAFMQRVSVCNVEKLFDCQKRPRTGRGSQGGRQWRSLRRDLSKKRQESSLVTLKAKEKTEKGTPYVPSDSEGSRTGCSQSTHMTLLELESKTDNSSTEICEIQPLCLQKIHQSGVNCLHVSEIKSGQNTDCCEMYSIVSGGDDQALNHLMVELSPKSINLSDGILCPEITHIASVPEYGKDFNFKNMSKKFKIRFLNNEKLPSAHSASVKGVWTDGSWVFSTGLDQRVRCWRLQRNKLIEHSYLIVSVPEPEALSARACGRNQYQIAVAGRGMQIIDFSES* 1371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0806 1370 ProSiteProfiles Trp-Asp (WD) repeats profile. 1071 1093 IPR001680 GO:0005515
Vra3g0806 1370 Gene3D - 27 167 IPR015943 GO:0005515
Vra3g0806 1370 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 276 IPR001680 GO:0005515
Vra3g0806 1370 Pfam WD domain, G-beta repeat 242 276 IPR001680 GO:0005515
Vra3g0806 1370 Pfam WD domain, G-beta repeat 122 158 IPR001680 GO:0005515
Vra3g0806 1370 Pfam WD domain, G-beta repeat 769 816 IPR001680 GO:0005515
Vra3g0806 1370 PANTHER WD REPEAT PROTEIN 20 1368 - -
Vra3g0806 1370 MobiDBLite consensus disorder prediction 1110 1166 - -
Vra3g0806 1370 Gene3D - 398 816 IPR015943 GO:0005515
Vra3g0806 1370 SUPERFAMILY WD40 repeat-like 408 1327 IPR036322 GO:0005515
Vra3g0806 1370 MobiDBLite consensus disorder prediction 1125 1153 - -
Vra3g0806 1370 SUPERFAMILY WD40 repeat-like 142 541 IPR036322 GO:0005515
Vra3g0806 1370 Gene3D - 189 394 IPR015943 GO:0005515
Vra3g0806 1370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 245 276 - -
Vra3g0806 1370 Gene3D - 1063 1337 IPR015943 GO:0005515
Vra3g0806 1370 SUPERFAMILY WD40 repeat-like 15 205 IPR036322 GO:0005515
Vra3g0806 1370 SMART WD40_4 498 540 IPR001680 GO:0005515
Vra3g0806 1370 SMART WD40_4 327 367 IPR001680 GO:0005515
Vra3g0806 1370 SMART WD40_4 111 158 IPR001680 GO:0005515
Vra3g0806 1370 SMART WD40_4 1278 1321 IPR001680 GO:0005515
Vra3g0806 1370 SMART WD40_4 765 818 IPR001680 GO:0005515
Vra3g0806 1370 SMART WD40_4 238 277 IPR001680 GO:0005515
Vra3g0806 1370 SMART WD40_4 288 325 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0806 Vra-Chr3 8222673 8234464 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0806 K24737 - gmx:100780968 2301.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0806 3 8222673 8234464 Vra3g0806 3 8222673 8234464 ECH