Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0787 ATGGGTACGGAGAGAAAGAGGAAGGTGAGCTTGTTCGACGTGGTAGATGATTCTCTAGCGAAGAAGGCGAAATCAAATGGCGGCGCCAATAACAGCGTTGCCAATGCTCTCATCAATCGCTGGAACGCAAGGCCTTACTCTCAGAGGTACTTCGATATTTTGGAGAAGAGAAAAACCCTCCCTGTTTGGCACCAGAAAGAAGAGTTCTTACAAGTTCTTAAAGATAACCAGACTTTGATTCTTGTCGGTGAAACTGGTAGTGGCAAAACCACTCAGATTCCTCAGTTTGTTTTGGATGCTGTCGAGTTAGAGACACCAGACAAACGTAGGAAGATGATGATTGCCTGCACTCAGCCTCGGAGAGTGGCTGCGATGTCTGTTTCGCGTCGTGTGGCTGAAGAGATGGATGTAACCATAGGGGAAGAGGTTGGTTACAGTATCAGATTTGAAGACTGCAGTAGTGCGAGGACAGTTTTGAAGTATCTAACCGATGGTATGCTCTTAAGGGAAGCAATGACAGATCCGCTTCTGGAGCGGTACAAGGTTATTATTCTAGATGAGGCTCACGAAAGGACTTTGGCCACTGATGTGTTATTTGGCCTTCTGAAAGAAGTGCTTAAAAATAGACCTGACTTGAAGTTGGTTGTTATGAGTGCTACTCTTGAAGCTGAAAAATTTCAGGGCTATTTTTTTGGTGCCCCTCTCATGAAAGTTCCTGGAAGGCTACACCCTGTTGAAATTTTCTACACACAGGAACCTGAAAGGGATTACTTGGAGGCTGGCATTAGGACAGTGGTACAAATACACATGTGTGAACCACCTGGAGATATACTTGTATTTCTGACTGGAGAGGAAGAGATAGAAGATGCTTGCCGCAAAATAACAAAAGAAATTTCTAATCTGGGAGATCAGGTGGGCCCTGTGAAAGTGGTACCCCTGTATTCTACCCTTCCTCCAGCTATGCAACAGAAGATTTTTGAGCCACCGCCACCTCCACTGAAGGAGGGTGGAATTCCTGGAAGGAAGATTGTGGTCTCAACAAACATAGCAGAAACTTCGTTGACAATTGATGGTATTGTTTATGTCATTGACCCTGGCTTTGCTAAGCAGAAGGTTTATAATCCACGAGTTCGTGTGGAGTCTTTATTAGTATCACCAATATCGAAAGCTAGTGCACATCAGAGGTCTGGGCGTGCCGGAAGAACTCAACCAGGGAAATGCTTTAGACTTTATACAGAGAGAAGTTTTAATAATGATCTTCAGCCACAGACCTATCCAGAAATTTTAAGATCAAATCTTGCCAATACAGTTCTTACTTTGAAGAAACTGGGCATAGATGATTTAGTGCATTTTGATTTCATGGACCCGCCTGCTCCTGAGACATTAATGCGTGCATTGGAAGTGTTGAATTACTTGGGTGCACTGGATGATGATGGTAACTTAACTAAGCTGGGTGAGATTATGAGTGAATTTCCCTTGGATCCACAGATGTCGAAGATGCTTGTTGTCAGTCCTGAATTCAACTGTTCAAATGAGATTCTGTCAATTTCTGCCATGCTGTCAGTACCCAATTGCTTTGTCCGGCCTAGGGAGGCTCAAAAAGCTGCGGATGAAGCTAAAGCTAGGTTTGGGCACATTGATGGAGATCATCTCACGCTGTTGAATGTCTATCACGCATACAAGCAAAATAATGAGGATCCCTCTTGGTGCTATGATAACTTTGTTAATCATAGGGCATTGAAATCAGCTGATAATGTTAGACAACAGTTAGTGCGTATCATGGCCCGGTTTAATCTGAAGCAATGCAGCACTGACTTTAATAGCCGCGACTACTATGTCAACATAAGAAAAGCTATGCTAGCTGGGTATTTCATGCAGGTAGCTCATTTGGAGCGTACAGGACACTACTTGACGGTGAAAGACAACCAGGTGGTGCATTTGCATCCATCAAATTGCCTGGACCACAAGCCTGAATGGGTAATTTATAACGAATATGTTCTTACCAGTCGGAATTTTATTCGTACTGTTACAGACATACGAGGGGAATGGTTGGTTGATGTAGCACCACATTACTATGATTTGTCTAATTTCCCCCAATGTGAGGCAAAGCGTGTTCTAGAGAAACTTTACAAGAAGCGAGAAAAGGAGAAGGAGGAAACCCGGAGTCGCAGATAA 2175 0.4363 MGTERKRKVSLFDVVDDSLAKKAKSNGGANNSVANALINRWNARPYSQRYFDILEKRKTLPVWHQKEEFLQVLKDNQTLILVGETGSGKTTQIPQFVLDAVELETPDKRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRLHPVEIFYTQEPERDYLEAGIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEISNLGDQVGPVKVVPLYSTLPPAMQQKIFEPPPPPLKEGGIPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKQCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDVAPHYYDLSNFPQCEAKRVLEKLYKKREKEKEETRSRR* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0787 724 Gene3D - 448 556 - -
Vra3g0787 724 CDD SF2_C_RHA 243 411 - -
Vra3g0787 724 Gene3D - 242 424 IPR027417 -
Vra3g0787 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 606 IPR027417 -
Vra3g0787 724 Pfam DEAD/DEAH box helicase 66 224 IPR011545 GO:0003676|GO:0005524
Vra3g0787 724 SMART ha2_5 464 554 IPR007502 GO:0004386
Vra3g0787 724 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 264 444 IPR001650 -
Vra3g0787 724 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 615 691 IPR011709 -
Vra3g0787 724 Gene3D - 9 241 IPR027417 -
Vra3g0787 724 Pfam Helicase conserved C-terminal domain 270 402 IPR001650 -
Vra3g0787 724 CDD DEXHc_DHX15 48 238 IPR044756 GO:0003724|GO:0005524
Vra3g0787 724 SMART ultradead3 57 248 IPR014001 -
Vra3g0787 724 PANTHER PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DEAH3-RELATED 1 723 - -
Vra3g0787 724 SMART helicmild6 285 403 IPR001650 -
Vra3g0787 724 Coils Coil 703 723 - -
Vra3g0787 724 Pfam Helicase associated domain (HA2) 465 553 IPR007502 GO:0004386
Vra3g0787 724 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 239 IPR014001 -
Vra3g0787 724 PANTHER ATP-DEPENDENT RNA HELICASE 1 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0787 Vra-Chr3 8069317 8073620 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0787 K12820 - gmx:100807162 1352.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0787 3 8069317 8073620 Vra3g0787 3 8069317 8073620 ECH