Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0786 ATGGCAAATAGACCGGATCCAGATATTGATGATGACTTTCGTGAGCTTTATAAGGAGTACACTGGCCCCCCAGGTTCTGCTGCTACGAACACGCAAGAGAGGGCAAAACCAAATAAGAGGTCTAATGCAGGGTCTGATGAGGAGGATGAAGGTCGGGACCCAAATGCTGTTCCCACTGATTTCACCAGCCGGGAAGCTAAGGTTTGGGAGGCTAAGTCAAAGGCTACTGAAAGGAATTGGAAGAAAAGGAAGGAGGAGGAAATGATATGCAAGCTTTGTGGAGAATCAGGGCATTTCACTCAGGGCTGCCCATCCACCCTTGGAGCCAATCGCAAGTCTCAAGATTTCTTTGAAAGGATACCTGCTAGAGACAAAAATGTACGGGCACTTTTCACAGAGAAAGTTTTAAGCAAGATTGAAAGGGACATTGGTTGCAAAATTAAGATGGATGAAAAGTTTATCATTGTCAGTGGTAAGGATAGATTAGTTATGGCAAAAGGTGTTGATGCGGTACATAAGATTCGAGAAGAGGGTGAACAAAGGGGATCATCTAGTTCTCAAATGACCCGATCAAGATCACCTGAGAGAAGTGAGAGAAGTCCGGTTAATGTGCGGTTTCAACGCACTGAGCCCCAAAGGTCTCATTCTGGACCACGTAGTACATCTCAGTTTCAACAAAGGTTTGGTAGGCAGGAGAGGGCTGTTGAAGACCGAATCCGGGAGGATGTTCAAAAGTTTGCTAGAGGTTCTCCACAAGCAAGAGCTTATGGAAATAGTGGAGCTAGAGGTCGATCAAGCCAGTCAAGATCTCCAAGACATGCCCCTTTTACAGGAAACTCATATAGTTCTTTTGATGGTCGTAATCAAAACATGGGTGCGTTTAGGAATGATGGCTGGGATCATAGAAGAGAATCTGGTATCCAGCCCGGTCATCAGTTTGATTACAATGCCACCCCACAGACTTTGGAAGAATTAGAGTTGGAGTATAAGAACGAGGCAACAGAGCTAATGAAAATTCGTGACAGAGAAGAAGATGAAGAAAATTTCAAGCATCGGGAGGCTATTAGAGATTTGAGGGAGCAGTACATGAGCAAAGTTGGCTTGGTAAGGGCTACACATGCAAAACAGTGGGAAGATTTCCTTCAGCATGATGCGCAGAGGCTTCAACAGCAGGCAGTTCAACAGATGTCTTCTGGTTATCGAGGTTTTAAACAGCAGAGCTTTCCTGAATATGATGGGTCCTCTGTCAATCCTCCTCCCTATGCTGGGACGAATTTACCATTGGATTCAAGGAACAGGTTCTCAGACAACATGGAACCTTATTCTACTAGGCCTCATGATAATTTTGGGGAATTTCATAGGCGTGGAGATTTTGCAAAAGCTTACAACAGATATTAA 1398 0.4449 MANRPDPDIDDDFRELYKEYTGPPGSAATNTQERAKPNKRSNAGSDEEDEGRDPNAVPTDFTSREAKVWEAKSKATERNWKKRKEEEMICKLCGESGHFTQGCPSTLGANRKSQDFFERIPARDKNVRALFTEKVLSKIERDIGCKIKMDEKFIIVSGKDRLVMAKGVDAVHKIREEGEQRGSSSSQMTRSRSPERSERSPVNVRFQRTEPQRSHSGPRSTSQFQQRFGRQERAVEDRIREDVQKFARGSPQARAYGNSGARGRSSQSRSPRHAPFTGNSYSSFDGRNQNMGAFRNDGWDHRRESGIQPGHQFDYNATPQTLEELELEYKNEATELMKIRDREEDEENFKHREAIRDLREQYMSKVGLVRATHAKQWEDFLQHDAQRLQQQAVQQMSSGYRGFKQQSFPEYDGSSVNPPPYAGTNLPLDSRNRFSDNMEPYSTRPHDNFGEFHRRGDFAKAYNRY* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0786 465 PANTHER OS01G0252900 PROTEIN 1 465 - -
Vra3g0786 465 PANTHER OS01G0252900 PROTEIN 1 465 - -
Vra3g0786 465 MobiDBLite consensus disorder prediction 404 421 - -
Vra3g0786 465 MobiDBLite consensus disorder prediction 204 229 - -
Vra3g0786 465 MobiDBLite consensus disorder prediction 259 288 - -
Vra3g0786 465 MobiDBLite consensus disorder prediction 39 55 - -
Vra3g0786 465 MobiDBLite consensus disorder prediction 24 38 - -
Vra3g0786 465 ProSiteProfiles Zinc finger CCHC-type profile. 90 105 IPR001878 GO:0003676|GO:0008270
Vra3g0786 465 MobiDBLite consensus disorder prediction 174 288 - -
Vra3g0786 465 MobiDBLite consensus disorder prediction 1 18 - -
Vra3g0786 465 Coils Coil 322 342 - -
Vra3g0786 465 MobiDBLite consensus disorder prediction 1 78 - -
Vra3g0786 465 SUPERFAMILY Retrovirus zinc finger-like domains 77 109 IPR036875 GO:0003676|GO:0008270
Vra3g0786 465 MobiDBLite consensus disorder prediction 404 428 - -
Vra3g0786 465 MobiDBLite consensus disorder prediction 230 247 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0786 - - gmx:100806099 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0786 3 8062349 8066587 Vra3g0786 3 8062349 8066587 ECH