Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0783 ATGGCTCCTCCCAACGATCCAGTGAATGCCACGTTAGGACTCGAGCCACCGGAAAAGCTTTTCGACTTATCTGACGGGAAACTCACCGTCAGAGGTGTGCCGTTACTCTCTCACGTACCCGAGAACGTCACTTTCACTTCCTTCTCCTCAATCTGTGAACCTCGTGATGTCCCATCTTCCATCCTTCAACGTGTCATTGCCGCGTCACACAAAGGTGGCTTTCTCGGATTCTCCCATGTTTCACCCTCCGACAGATTGATAAACTCCTTGGGAAGCTTCAGAGGGAGAAACTTCCTCAGCATCTTCAGGTTCAAAACATGGTGGTCGACCCAGTGGGTCGGAAATTCCGGTTCAGACTTACAAATGGAAACCCAATGGCTCCTCATAGANGTCCCCGAAACAGAATCCTATGTCGTAATCATTCCCATAATAGAAAAAAGCTTCAGGTCCGCGCTTCAACCTGGCTCTGATGATCATGTTAAGATTTGCGCGGAGAGTGGTTCTACTCAAGTGAGAGCATCGAGTTTCGGTGCAATTGCATATGTCCACGTGGCTGAAAACCCTTACAACTTGATGAGAGAGGCATATAGTGCTCTCAGGGTTCACCTTGACTCGTTTAGGTTGTTGGAGGAGAAAACGGTGCCAAGAATTGTTGACAAATTCGGGTGGTGCACTTGGGATGCGTTTTACTTAACCGTCAACCCCGTTGGAGTTTGGCATGGGCTTAAGGATTTCAGTGAGGGTGGCGTGGCTCCGAGGTTTGTTATCATCGATGACGGTTGGCAAAGTGTGAATTTTGATGATGAGGACCCCAACGAGGATGCTAAGAATCTTGTTCTTGGTGGGGAACAAATGACTGCGAGGCTTCATAGGTTTGAAGAAGGTGACAAGTTTAGAAAATACCAAAAGGGTCTTCTCTTGGGTCCTAATGCTCCTTCTTTCAACCCGGAGACGATAAAGCAGTTGATCTCGAAGGGTATTGAAGCTGAGCATTTGGGAAAGCAACGTGCTGCCGCCATTTCAGCTGGGGGTTCGGATTTGGCCGAGATAGAGTTGATGATTTTGAAGGTGAGAAAGGAAATTGATGATCTCTTTGGAGGGAAGGGAAAGGAGAGCAACGAAAGTGGAGGGTGTTGTTGTAAAGCACTGGAATGTGGTGGTATGAAGGACTTCACAACGGATTTGAGGACTGAGTTCAAAGGTTTGGATGATGTTTATGTGTGGCATGCGCTCTGTGGCGGATGGGGTGGTGTGAGGCCAGGTACTACACATCTTGATTCCAAAATAATACCATGCAAACTCTCTCCTGGCCTTGTTGGGACCATGAAGGATCTTGCAGTGGATAAAATAGTGGAAGCTTCCATAGGGCTTGTTCATCCTCATCAAGCTAATGACCTCTACGACTCCATGCACTCTTATCTTGTCCAAGTCGGTGTTACTGGAGTCAAAATTGACGTCATTCACAGTCTTGAATACGTATGCGAGGAATATGGAGGCAGAGTGGAGATTGCCAAGGCATATTACGATGGGTTGACAAACTCCATCATCAAGAATTTCAATGGAAGTGGAATCATCGCTAGCATGCAACAGTGCAACGATTTCTTCTTCCTCGGAACCAAGCAAATTCCCTTTGGAAGAGTTGGGGATGACTTTTGGTTCCAAGATCCGAATGGGGACCCAATGGGAGTGTTCTGGTTACAGGGGGTGCACATGATTCACTGTTCCTACAACAGCTTGTGGATGGGACAGATAATTCAACCCGATTGGGACATGTTTCAATCGGATCATAAGTGTGCAAAATTTCATGCGGGTTCAAGGGCTATTTGTGGTGGTCCTGTCTATGTGAGTGATAGTGTTGGCTCTCATGATTTTGATCTCATTAAGAAGCTTGTCTTCCCTGATGGTACCGTGCCCAAATGCATATATTTTCCCCTTCCAACAAGAGACTGCCTTTTCAGGAACCCTCTCTTTGATCAAAAAACCGTTCTCAAAATTTGGAACTTCAATAAGTATGGAGGAGTTATTGGTGCTTTCAACTGTCAAGGGGCTGGTTGGGACCCAAAGGAGAAGAAATTCAGGGGTTTCCCAGAGTGTTACAAACCAATATCATGCACTGTTCATGTAACTGAGGTTGAATGGGATCAAAAGAAAGAAGCAGCACATATGGGTAAGGCAGAGGAGTATGTTGTGTACCTCAATCAGGCTGAGGTACTGCATTTCATGACCCCCGTGTCTGAACCACTGCAATTAACTATTCANCCATCCACTTTTGAACTTTATAACTTTGTCCCAGTTGAAAAGCTAGGTAGTAGCAACATAAAATTTGCACCCATTGGGCTAACAAACATGTTCAACAGTGGAGGCACAATTCAAGAATTGGAGTATGTTGAGAAGGATGTTAAAGTTAAGGTTAAGGGTGGTGGGAGATTCCTTGCTTACTCAAGTGAATCTCCAAAGAAGTTCCAACTGAATGGTTCTGATGCTGCTTTCCAGTGGCTGCCTGATGGCAAACTCACTCTTAACCTTGCTTGGATTGAAGAGAATGGCGGGATTTCTGATTTGGCAATTTTTTTTTAG 2577 0.4563 MAPPNDPVNATLGLEPPEKLFDLSDGKLTVRGVPLLSHVPENVTFTSFSSICEPRDVPSSILQRVIAASHKGGFLGFSHVSPSDRLINSLGSFRGRNFLSIFRFKTWWSTQWVGNSGSDLQMETQWLLIXVPETESYVVIIPIIEKSFRSALQPGSDDHVKICAESGSTQVRASSFGAIAYVHVAENPYNLMREAYSALRVHLDSFRLLEEKTVPRIVDKFGWCTWDAFYLTVNPVGVWHGLKDFSEGGVAPRFVIIDDGWQSVNFDDEDPNEDAKNLVLGGEQMTARLHRFEEGDKFRKYQKGLLLGPNAPSFNPETIKQLISKGIEAEHLGKQRAAAISAGGSDLAEIELMILKVRKEIDDLFGGKGKESNESGGCCCKALECGGMKDFTTDLRTEFKGLDDVYVWHALCGGWGGVRPGTTHLDSKIIPCKLSPGLVGTMKDLAVDKIVEASIGLVHPHQANDLYDSMHSYLVQVGVTGVKIDVIHSLEYVCEEYGGRVEIAKAYYDGLTNSIIKNFNGSGIIASMQQCNDFFFLGTKQIPFGRVGDDFWFQDPNGDPMGVFWLQGVHMIHCSYNSLWMGQIIQPDWDMFQSDHKCAKFHAGSRAICGGPVYVSDSVGSHDFDLIKKLVFPDGTVPKCIYFPLPTRDCLFRNPLFDQKTVLKIWNFNKYGGVIGAFNCQGAGWDPKEKKFRGFPECYKPISCTVHVTEVEWDQKKEAAHMGKAEEYVVYLNQAEVLHFMTPVSEPLQLTIXPSTFELYNFVPVEKLGSSNIKFAPIGLTNMFNSGGTIQELEYVEKDVKVKVKGGGRFLAYSSESPKKFQLNGSDAAFQWLPDGKLTLNLAWIEENGGISDLAIFF* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0783 858 SUPERFAMILY (Trans)glycosidases 217 269 IPR017853 -
Vra3g0783 858 PANTHER - 1 858 IPR008811 -
Vra3g0783 858 Pfam Raffinose synthase or seed imbibition protein Sip1 21 841 IPR008811 -
Vra3g0783 858 SUPERFAMILY (Trans)glycosidases 387 630 IPR017853 -
Vra3g0783 858 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 4-RELATED 1 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0783 Vra-Chr3 8024649 8027674 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0783 21 858 Glycoside Hydrolase AT4G01970 59.386 0.0 1048
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0783 K06611 - gmx:100815922 1541.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0783 3 8024649 8027674 Vra3g0783 3 8024649 8027674 ECH