Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0765 ATGGGTCCTTCTCGTCGCAACAGCAATGGTCGATCACCGCTCGTCAATCAACAGCGTCAAATCACTTCGTTCTTCACCAAATCCCCGTCCCCCTCTCCCACCCTCGCCAAAACCAACCAAAAGCCAAACCCTAGCCACGATTCAGATCCTAGCCCTAGCCCTAGTTCCACGACTCTCACTCCCTCACCTCTCAATCCCAAGCCGAACAAATCCCTTCTTGTGATCGGCGCTTCCGTTTCTCCACCCTCTGCTTCGTCTTCTCTCTACGGCCAAGAAGTCGTTGGCCGAAGGGTGAAGATTTATTGGCCGTTAGACAAAGCCTGGTACGAAGGTTCCATCAAATCCTTTGATAAAAGCACCTCTAAGCACGTGGTTCGTTACTTAGATGACGAAGAGGAATCGCTCATCCTGGCCGAGGAGAAAATCGAGTGGCTCCACGAGTCCTCTACAAAGAAACTTAAACGCTTGCGTCGCGGATTCCCCGACATCAGGAAGATGGAGATTGATGAGGAAGAATTAAAAGAAGAAAGTAGTAAAGGAGAAAAAGAAGAACATGATAGTGTTAACGATGATGATGATGATTCCAATGACGAGGATTGGGGGAAGAAGGCTGCATCATTGGAGGATGCTGGGGATGGGGAAGAAGATACGGATTTAGAGGACGAGGACGAAGTGGACGTAGCAGGAAGTGCTAAAGGAAAAAGGGTTGAGGCTAAAAAGCGGAAACTAAATGCAACGGATAAACTAGAGCCAGCGAAAAAGAGCAAGAGTGGAGTGGAAGTTTGTAAAGGGAGTTTCAAGCTCTCAGTTTTGGAGCCTACTACTAATTTAGAGATTAAAAAGATATCTAGTGGCGCTGACAATGTTTCATTAACTGAGACCTCTGAAAGATTTGCATCTCGTGAAGCTCAGAAGCTGCGCTTCCTGAAAGTAGACCGCAGGGATGCCAAGCGAAGAAGACCAGGGGATGAAAATTATGATTCAAGAACTCTCTACTTACCTCCCGATTTCTTAAAGAATTTGTCAGAGGGTCAGAAACAATGGTGGGAGTTCAAGTCAAAGCATATGGACAAAGTGTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTTTGAGATGGATGCACATGTAGGAGTTAAAGAGCTTGATTTGCAGTATATGAAGGGAGACCAACCTCATTGTGGATTTCCAGAGAAGAACTTCTCGATGAACGTAGAGAAACTGGCTAGGAAGGGTTATCGTGTTCTTGTTGTGGAGCAGACTGAAACACCTGAACAGCTGGAGCTTCGTCGTAAGGAGAAGGGCTCTAAAGATAAGGTTGTAAGGCGTGAGATATGTGCAGTGGTAACAAAAGGTACATTAACGGATGGGGAGTTGCTGTCTGCAAACCCTGAAGCTGCATATTTAATGGCCCTAACTGAGCATCATGAGAAACTTCCAAATGAAATTTCAGAGCGTACCTATGGTGTTTGTATAGTTGATGTTGCCACGAGTAGAGTCATTCTTGGACAGTTTAAGGACGACTTGGACTGCAGTGCCTTGTGCTCTATCTTGTCTGAGATCAGGCCTGTTGAAATTGTTAAACCCGCCAAACAACTCAGTGCTGAAACGGAGAGAGCTCTGCTGAAGCATACTAGAAACCCTTTAGTGAATGAATTAATTCCAGGTGTGGAATTCTGGGATGCTGGCAAAACTCGGGATCAATTGAAGAAAATTTATGGGAACGCTAATGATGTTAGTGTTGAAGATAACGGGTTAGACTGCCTGCCAAATGTTTTACAGGAGCTGGTGAAAACAGGTGACAACAGTATAAGTGCACTTTCAGCACTAGGTGGTGCACTCTATTATCTGAAGCAGGCTTTTCTAGATGAGAGGTTGCTTAGATTCGCACAGTTTGAGTTACTTCCGCATTCTGGTTTTGATGATCTGGCTTCAAAACACTACATGGTTCTTGATGTGGCTGCCTTGGAGAATCTTGAGATTTTTGAGAATAGCAGGAATGGAGGTTCTTCTGGCACACTCTATGCGCAACTAAACCAATGTGTTACTGCATTTGGAAAGAGATTGCTAAAGACATGGCTTGCAAGACCGTTATGTAATGTGGAGTCCATTAAGGAACGCCAGGAAGCTGTTGCATGTTTGAAGGGAGTTAACCTACCATCTGCTCTAGAATTTCGTGGAGCATTATCCAAGCTACCTGACATGGAGCGATTGCTTGCACGCATATTTTGCTCTAGTGAAGCTAGTGGAAGGAATGCTAATAAAGTTATTCTATATGAGGATGCAGCTAAGAAGCAAGTACAAGAGTTCATTGCAGCTCTCCGTGGCTGTGAACAGATGCTAGAAGCATGCTCTTCACTTGGTGTCATTTTGAATGATGTCCAATCTAGACAACTTCATCATCTGTTAACACCGGGTAAAGGACTTCCTGATGTTCGTATGGAACTTAATCATTTCAAGGATGCTTTTGATTGGGTGGAAGCCAATAGCTCTGGGCGTATAATACCTCATGAAGGAGTCGACACAGAGTATGCCTCAGCCTGTAAGACGGTTAAAGAGATTGAGTCCACTTTGTTGAAGCATCTCAAGAAGCAAAGAGAACTACTTGGAGACACATCAATTGCTTACGTCAATGTTGGAAAGGATGTGTACCTATTGGAAGTGCCAGAAAATTTATCTAGGAATATCCCTCGGGATTATGAATTGCGTTCATCCAGAAAAGGTTTCTTTAGGTACTGGACTCCAGATATTAAAATTTATTTAAAAGAACTCTCCCAAGCTGAATTGGAAAAGGAGTCCTTGTTGAAAAATACATTGCAGAGACTGATTGGGCGCTTTTGTGAAAACCACAAGGAGTGGAAGCAGTTGGTCTCTGCAACTGCAGAACTGGATCTGTTGATAAGTTTAGCAATAGCTGGTGACTACTATGAAGGACCAACATGCACACCAACTTTCGTTGGTGCATTATGTACTAAAGGAGCTCCTTACCTCCATGCTAAAAGTTTGGGACACCCTGTCCTCAGGAGTGATACCTTAGGCAAGGGTGCGTTTGTTCCCAATGACATAACCATTGGTGGTTCGGATCAAGCCAGCTTTATCCTTCTAACAGGTCCTAACATGGGTGGGAAGTCAACTCTTCTTCGTCAGGTTTGCTTGACTGTGATTCTGGCCCAGGTAGGAGCTGATGTCCCAGCAGAAAGCTTTGATTTGTCACCTGTTGATCGGATTTTTGTTCGAATGGGGGCCAAAGATAATATAATGGCTGGCCAAAGTACATTTTTAACTGAGCTTTCAGAAACTGCAACGATGCTGTCATCAGCCACTCGTAACTCATTGGTGGCTCTGGATGAGCTTGGGCGAGGGACTGCAACTTCTGATGGGCAAGCCATTGCGGAATCAGTTTTAGAACATTTTGTGCGGAAGGTGCAGTGTCGTGGATTGTTTTCTACCCATTATCATCGCTTAGCTGTAGATTATCTCAACGATCCCAAGGTCTGTCTCAGTCACATGGCATGCCAAGTTGGTGATGGAATTGCAGGTTTAGACGAAGTCACCTTTCTTTACAGGCTAACGCCTGGTGCTTGCCCCAAGAGCTATGGTGTTAACGTTGCTCGGATAGCTGGACTTCCAACTTCTGTACTTCAGAAGGCTGCTGTCAAATCTAGAGAATTTGAGGCCAGTTATGGTAAATGTAGAAAGGTGTCTTCTGAAACAAACTCTCCTAATAAAAACTGGGTTGACGAGATAACAGCTATCATACGAAAATTGACCGAAATTGCCACCAGTTTGAGTTGCCAGAAAACCCTTTGCGTTGGTTCCCTAAGGGAACTTCAGGACAAAGCACGAGAATCGATGCAGCGGCGATGTTAA 3870 0.4444 MGPSRRNSNGRSPLVNQQRQITSFFTKSPSPSPTLAKTNQKPNPSHDSDPSPSPSSTTLTPSPLNPKPNKSLLVIGASVSPPSASSSLYGQEVVGRRVKIYWPLDKAWYEGSIKSFDKSTSKHVVRYLDDEEESLILAEEKIEWLHESSTKKLKRLRRGFPDIRKMEIDEEELKEESSKGEKEEHDSVNDDDDDSNDEDWGKKAASLEDAGDGEEDTDLEDEDEVDVAGSAKGKRVEAKKRKLNATDKLEPAKKSKSGVEVCKGSFKLSVLEPTTNLEIKKISSGADNVSLTETSERFASREAQKLRFLKVDRRDAKRRRPGDENYDSRTLYLPPDFLKNLSEGQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGVKELDLQYMKGDQPHCGFPEKNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVRREICAVVTKGTLTDGELLSANPEAAYLMALTEHHEKLPNEISERTYGVCIVDVATSRVILGQFKDDLDCSALCSILSEIRPVEIVKPAKQLSAETERALLKHTRNPLVNELIPGVEFWDAGKTRDQLKKIYGNANDVSVEDNGLDCLPNVLQELVKTGDNSISALSALGGALYYLKQAFLDERLLRFAQFELLPHSGFDDLASKHYMVLDVAALENLEIFENSRNGGSSGTLYAQLNQCVTAFGKRLLKTWLARPLCNVESIKERQEAVACLKGVNLPSALEFRGALSKLPDMERLLARIFCSSEASGRNANKVILYEDAAKKQVQEFIAALRGCEQMLEACSSLGVILNDVQSRQLHHLLTPGKGLPDVRMELNHFKDAFDWVEANSSGRIIPHEGVDTEYASACKTVKEIESTLLKHLKKQRELLGDTSIAYVNVGKDVYLLEVPENLSRNIPRDYELRSSRKGFFRYWTPDIKIYLKELSQAELEKESLLKNTLQRLIGRFCENHKEWKQLVSATAELDLLISLAIAGDYYEGPTCTPTFVGALCTKGAPYLHAKSLGHPVLRSDTLGKGAFVPNDITIGGSDQASFILLTGPNMGGKSTLLRQVCLTVILAQVGADVPAESFDLSPVDRIFVRMGAKDNIMAGQSTFLTELSETATMLSSATRNSLVALDELGRGTATSDGQAIAESVLEHFVRKVQCRGLFSTHYHRLAVDYLNDPKVCLSHMACQVGDGIAGLDEVTFLYRLTPGACPKSYGVNVARIAGLPTSVLQKAAVKSREFEASYGKCRKVSSETNSPNKNWVDEITAIIRKLTEIATSLSCQKTLCVGSLRELQDKARESMQRRC* 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0765 1289 MobiDBLite consensus disorder prediction 226 240 - -
Vra3g0765 1289 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 994 1225 IPR027417 -
Vra3g0765 1289 SUPERFAMILY DNA repair protein MutS, domain I 330 453 IPR016151 GO:0005524|GO:0006298|GO:0030983
Vra3g0765 1289 Pfam MutS domain I 345 457 IPR007695 GO:0005524|GO:0006298|GO:0030983
Vra3g0765 1289 Gene3D MutS, connector domain 466 647 IPR036678 GO:0005524|GO:0006298|GO:0030983
Vra3g0765 1289 SMART TUDOR_7 90 148 IPR002999 -
Vra3g0765 1289 Pfam MutS family domain IV 839 928 IPR007861 GO:0005524|GO:0006298|GO:0030983
Vra3g0765 1289 SMART DNAend 669 1010 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vra3g0765 1289 Gene3D - 91 144 - -
Vra3g0765 1289 SUPERFAMILY DNA repair protein MutS, domain II 463 664 IPR036678 GO:0005524|GO:0006298|GO:0030983
Vra3g0765 1289 SMART mutATP5 1030 1222 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vra3g0765 1289 Coils Coil 917 937 - -
Vra3g0765 1289 PIRSF Msh6 2 1269 IPR017261 GO:0006298|GO:0030983
Vra3g0765 1289 Pfam MutS domain V 1034 1224 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vra3g0765 1289 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 305 1262 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Vra3g0765 1289 MobiDBLite consensus disorder prediction 1 70 - -
Vra3g0765 1289 Coils Coil 163 183 - -
Vra3g0765 1289 MobiDBLite consensus disorder prediction 211 225 - -
Vra3g0765 1289 Gene3D - 649 970 - -
Vra3g0765 1289 MobiDBLite consensus disorder prediction 1 55 - -
Vra3g0765 1289 Pfam MutS domain II 468 620 IPR007860 GO:0005524|GO:0006298|GO:0030983
Vra3g0765 1289 PANTHER DNA MISMATCH REPAIR PROTEIN MSH6 305 1262 - -
Vra3g0765 1289 Gene3D DNA repair protein MutS, domain I 300 461 IPR016151 GO:0005524|GO:0006298|GO:0030983
Vra3g0765 1289 SUPERFAMILY DNA repair protein MutS, domain III 652 973 IPR036187 -
Vra3g0765 1289 Pfam MutS domain III 655 970 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vra3g0765 1289 MobiDBLite consensus disorder prediction 165 240 - -
Vra3g0765 1289 Gene3D - 981 1258 IPR027417 -
Vra3g0765 1289 MobiDBLite consensus disorder prediction 165 186 - -
Vra3g0765 1289 Gene3D - 815 946 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0765 Vra-Chr3 7895394 7904385 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0765 K08737 - gmx:100811104 2056.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0765 3 7895394 7904385 Vra3g0765 3 7895394 7904385 ECH