Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0745 ATGGTCAAAACGGCGTCGTCTCCTTCTTCCTCTCCGGTCACCATAACGGTGTCGTCAGGAGGTAGGCGCAGAAGCATGGGACTAACCAGTCCCGTTCCTCGCGCCTCAGTCTCCACCAACAACCCCACTTCTCCTCTTCGAGCTTCCGGCGGAGGTAGGAGACTCTCCGGCACCGGCACTTCCCAAAGCGGTGGCATCGAAGAAATGAACTCCGAGTACGTGACATACACCGTTCACATTCCCCCGACGCCGGATCGCAAGCCCCTTACAGTCTCGCAAGACGGAAAAGGAAGCACGAGTTTCATCTCCGGAACGATCTTCACCGGAGGCTACAACTCCGTGACGCGCGGCCATTCCTCCGTGGAAATTGAAGCGCTGCCGAAATCCGCGTCGGTTTGCGGAATGAAGGGCTGCAACGAGGAACCAATGAAAGGAGGCTTGTGTGATCCATGCGAGTGCGGGTTCAAGCTCTGCAGGGAGTGTTACTTAGAGTGTGGAGGGAACAATGTTGGAGGAAAGTGTCCTGGGTGCAAATTGCCTTATAAGTATGCGAGTGATGATGAAGATGATGAAGAGGGAGAGGGGTCTGAGGGTGAGGATCAGCCTCTGCCTCTGCCTTCCATGGCGGAGGTCAAGTTGGACAAGAGGTTTTCTCTTGTGAAGTCTTTCAAAGCGCAGAATCATCCTCCGGAATTTGACCACACGCGATGGCTGTTTGAGACGAAGGGGACATATGGCTATGGAAACGCTGTGTGGCCTAAAGATGGTTACGGTGCTAACGGGTTTGAACCCCCTCCGGATTTTGGAAAGAAATCGAAAAGACCCTTGACCCGCAAGGTTGGAGTTTCAGCTGCTATTCTCAGTCCTTATAGGATGCTTATTCTTCTGCGTCTTGTTGCTTTGGGTTTATTTCTTACATGGAGGATAAGACACCCAAACCATGAAGCGATGTGGCTGTGGGCAATGTCTATAACTTGTGAGCTATGGTTTGCATTTTCTTGGATTCTTGATCAGCTTCCTAAGCTCTGTCCTGTGAATAGAGTCACTGATCTATCTGTTCTGAAAGAACAGTTTGAGTCTCCAAACCTGAGGAATCCAAAGGGAAGATCTGATCTACCAGGAATTGATGTGTTTGTTTCCACGGCAGACCCTGAAAAGGAGCCTCCTCTTGTTACTGCCAACACCATTCTCTCCATCCTTGCAGTTGATTATCCGGTGGAGAAGGTTGCCTGTTACTTGTCTGATGATGGTGGAGCATTGTTGACATTTGAAGCTCTTGCTGAGACTGCTAGTTTTGCAAGAATTTGGGTTCCTTTCTGTCGGAAGCACAATATAGAACCCCGAAATCCTGAAGCTTATTTTGGGCAGAAACGTGATTTTCTCAAGAATAAGGTCCGGTTGGACTTTGTGAGAGAGAGGAAAAGGGTGAAGAGGGAGTATGATGAATTCAAAGTGAGGATAAACTCCTTGCCAGAGTCCATTAGGAGAAGATCCAACGCTTACAATGCTCATGAGGAGCTACGAGTCAAGAAGAAACAGATGGAAACAGATGCCAGTGTCTCCGAACCCGTCAAGGTTCCTAAAGCTACGTGGATGTCCGATGGTTCTCATTGGCCGGGAACTTGGGCATCAGCGGAACAAGACCATTCAAGGGGGGACCATGCTGGCATAATTCAGGCAATGTTAGCTCCACCAAACGCAGAACCGGAATTTGGTGCAGGAACTGATGGAGATAACTTGATTGATACAACAGATGTTGATATTAGGTTGCCCATGCTTGTTTACGTGTCTCGTGAAAAGAGGCCAGCATATGACCACAACAAGAAAGCAGGGGCAATGAATGCCCTTGTTCGCACCAGCGCCATCATGTCCAATGGTCCATTCATTCTGAATCTTGATTGTGATCATTACATCTACAACTCGTTGGCTCTAAGAGAAGGTATGTGCTTTATGCTTGACAGGGGAGGTGATAGGATATGTTACGTTCAGTTTCCTCAAAGGTTTGAGGGCATTGACCCCAGTGACAGATATGCAAATCACAACACTGTGTTCTTTGATGTGAGCATGAGAGCTCTTGATGGCTTACAAGGCCCCATGTACGTGGGAACAGGCTGCATATTCAGAAGAACAGCTCTGTATGGATTTAGTCCTCCTAGAGCCACAGAACATCGTGGGTGGTTTGGCAAGAGGAAAATTAAGCTATTTCTGAGAAGGCCAAAGGTCTCAAAAAAGGAAGAGGATGAAGTTTCTGTGCCAATAAATAGTGATCACAATGATGATGATGCAGATATAGAGTCCTTGCTTCTTCCCAAAAGATTTGGTAATTCTACTTCTCTTGCTGCATCCATTCCTGTGGCAGAATACCAGGGAAGGCTGCTTCAAGATTTGCAAGGAAAGGGAACACATGGAAGGCCAGTAGGTTCTCTAGCTGTGCCTCGTGAGCCATTGGATGCGGCCACTGTTGCTGAGGCAATAACTGTGATATCTTGTTTCTATGAAGATAAAACTGAATGGGGCAAACGAGTGGGGTGGATATATGGTTCAGTTACAGAAGATGTGGTAACTGGTTACAGAATGCACAATAGAGGGTGGAGATCAGTGTACTGTGTAACCAAAAGAGATGCTTTTAGAGGATCGGCTCCAATCAATTTAACAGACAGGCTTCATCAAGTGCTTCGATGGGCTACAGGTTCCGTTGAAATCTTCTTTTCAGCTAACAATGCATTATTAGCAAGTCCAAGAATGAAGTTCCTGCAGAGGGTGGCATATTTAAATGTAGGAATGTACCCTTTCACCTCAATGTTTTTGATAGTGTATTGCTTTCTACCCGCAATGTCTCTATTTTCGGGTCAATTTATAGTCCAATCTCTCAGTGTAACTTTTCTAGTATTCTTGCTGGGTATCACAATCACACTGTGTTTGCTTGCACTGCTGGAAATCAAATGGTCAGGAATCACTCTACATGATTGGTGGAGAAATGAGCAATTCTGGCTAATTGGTGGAACAAGTGCACACGCTGCTGCTGTTTTACAAGGGTTATTGAAGGTAATAGCTGGAGTGGAAATATCATTCACTTTAACTTCAAAATCAGCCACTCCAGAAAATGAAGATGATGAGTTTGCTGACCTCTATGAGGTGAAGTGGAGCTTTCTAATGATCCCTCCCATTACTATTATGATGGTGAACGCTATTGCTATTGCAGTAGGGGTGGCTAGGACCATGTACAGTCCCTTTCCACAATGGAGCAGGCTAGTAGGAGGGGTGTTTTTCAGTTTATGGGTCTTGTGCCATCTTTATCCTTTTGCAAAGGGTCTCATGGGAAGAAGAGGAAAGATTCCTACCATCATTTATGTTTGGTCTGGATTACTCTCCATTATTATTTCTTTGCTCTGGGTATACATAAACCCTCCTTCAGGGATAACAGAAGATTATATGAACTTCAAATTTCCTTGA 3453 0.461 MVKTASSPSSSPVTITVSSGGRRRSMGLTSPVPRASVSTNNPTSPLRASGGGRRLSGTGTSQSGGIEEMNSEYVTYTVHIPPTPDRKPLTVSQDGKGSTSFISGTIFTGGYNSVTRGHSSVEIEALPKSASVCGMKGCNEEPMKGGLCDPCECGFKLCRECYLECGGNNVGGKCPGCKLPYKYASDDEDDEEGEGSEGEDQPLPLPSMAEVKLDKRFSLVKSFKAQNHPPEFDHTRWLFETKGTYGYGNAVWPKDGYGANGFEPPPDFGKKSKRPLTRKVGVSAAILSPYRMLILLRLVALGLFLTWRIRHPNHEAMWLWAMSITCELWFAFSWILDQLPKLCPVNRVTDLSVLKEQFESPNLRNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKVACYLSDDGGALLTFEALAETASFARIWVPFCRKHNIEPRNPEAYFGQKRDFLKNKVRLDFVRERKRVKREYDEFKVRINSLPESIRRRSNAYNAHEELRVKKKQMETDASVSEPVKVPKATWMSDGSHWPGTWASAEQDHSRGDHAGIIQAMLAPPNAEPEFGAGTDGDNLIDTTDVDIRLPMLVYVSREKRPAYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVSMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHRGWFGKRKIKLFLRRPKVSKKEEDEVSVPINSDHNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGTHGRPVGSLAVPREPLDAATVAEAITVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGSAPINLTDRLHQVLRWATGSVEIFFSANNALLASPRMKFLQRVAYLNVGMYPFTSMFLIVYCFLPAMSLFSGQFIVQSLSVTFLVFLLGITITLCLLALLEIKWSGITLHDWWRNEQFWLIGGTSAHAAAVLQGLLKVIAGVEISFTLTSKSATPENEDDEFADLYEVKWSFLMIPPITIMMVNAIAIAVGVARTMYSPFPQWSRLVGGVFFSLWVLCHLYPFAKGLMGRRGKIPTIIYVWSGLLSIIISLLWVYINPPSGITEDYMNFKFP* 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0745 1150 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 583 727 IPR029044 -
Vra3g0745 1150 MobiDBLite consensus disorder prediction 1 67 - -
Vra3g0745 1150 MobiDBLite consensus disorder prediction 185 206 - -
Vra3g0745 1150 MobiDBLite consensus disorder prediction 1 47 - -
Vra3g0745 1150 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 89 1143 - -
Vra3g0745 1150 Pfam Cellulose synthase 375 1139 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vra3g0745 1150 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 89 1143 - -
Vra3g0745 1150 SUPERFAMILY Nucleotide-diphospho-sugar transferases 390 943 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0745 Vra-Chr3 7735913 7740588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0745 34 1150 Glycosyltransferase AT3G03050 65.391 0.0 1518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0745 K00770 - gmx:100804687 2090.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0745 3 7735913 7740588 Vra3g0745 3 7735913 7740588 ECH