Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0734 ATGGCCTCTGCATCCTCCATGTCAGTTTCTTTAGAATGCGTGAATGCCTGCAAGCTCTGGAGAGGGGACGGAAGCGGAAAATTCGACTGTAGTCTTCTTTCCTGCGCATGGAAAGCTCCAAGGTTTCTCACTGGCTTTCTTGCGAGCACTGCTCATCCTCCTCACCAGTGTTCGGACTTGTACAACGGACGTAATGGACGAAGGAACCGGTATAATTTTGGATGTGAAGCTTTTAGTGTAAGTGGTTCTTGTTCCGATGAACCACTTGATATTGTACTTTTTGAAGGATTGTCTAGGTCAAACATGTCTCAAGTTGCTCCCAGAAGAGGGCAATTATGTTGTTCTTCAGCCTTCCCTTCCAACATCGCCACTGATTTTTCCCCAAAAAGTTTGTGGGAGGATCTTAAACCTGCTATTTCATACCTGTCTTCAAAAGAACTGGAGTTAGTCCACAATGCTTTTATGTTGGCGTTTAAAGCTCACGATGGTCAGAAAAGACGCAGCGGTGAACCCTTCATCATTCACCCAGTTGAGGTTGCGCGTATTCTTGGGGAACTTGAACTTGATTGGGAGTCAATTGCTGCCGGATTACTTCATGACACAGTTGAGGATACAAATGTCGTTACTTTTGAGAGGATAGAGGAGGAGTTTGGTGCTACTGTGCGCCACATTGTGGAAGGAGAGACCAAGGTATCGAAACTTGGAAAGTTGAAGTATAAGAATGAAAATGATTCTGTTCAAGATGTGAAAGCAGAAGATCTTCGGCAAATGTTTCTAGCTATGACAGAGGAGGTTCGTGTTATAATTGTCAAATTAGCAGATAGGTTGCATAACATGCGTACACTATCGCATATGCCTCCACATAAACAGGCTAGCATTGCAATGGAGACATTGCAGGTATTTGCTCCTTTAGCGAAGTTGCTTGGGATGTATCAAATTAAGTCAGAACTAGAAAACCTGTCATTTATGTACACAAATGCGGAAGACTATGCTAAGGTGAAGAGAAGAGTAGCAGAGCTATACAAAGAACATGAGAAAGAACTTCTGGAGGCAAACAAAATATTTATGAAGAAAATCCAAGATGATCAATTATTAGACCTTCTAACTGTTAAAACAGAAGTCCGTGCTGTCTGTAAAGAGCCTTACAGTATCTATAAGGCAGTTCTCAAATCAAAAAGTTCAATCAGTGAGATTAACCAAATCGCACAGCTTCGTATTGTTATTAAACCAAAGCCATGCATTGGGGTTGGGCCTTTGTGCAATCCACAACAGATTTGCTATCATGTTCTGGGGTTGATCCATGGAATCTGGACTCCTATTCCTAGATCTGTGAAGGATTATATTGCAACCCCCAAACCAAATGGCTACCAAAGTCTCCATACCACTGTGATTCCATTTTTGTACGAAAGCATGTTTAGGCTAGAAGTCCAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGAGGCATTGCTGCCCATTACAGTGGGAGAGAATTTGTCACTGGCTTGGTTGGAAGTGCTACACCAAGTGGTAAAAGCTCAAGAGGGAAGACGGTTTGTCTTAACAACGCCAACATTGCACTCAGAATTGGCTGGCTGAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAATTTGTGGACACTATTACAAGAGATCTGCTGGGTAGTCGTGTCTTTGTGTTCACACCAAGGGGAGAGATTAAGAATCTTCCTCAGGGTGCTAGTGTCATTGATTATGCTTATATGATACACACTGAAATAGGAAACAAGATGGTAGCTGCGAAGGTCAATGGAAATCTTGTTTCTCCCACACATGTACTTGCAAATGCAGAAGTTGTGGAGATAATCACATATAATGCACTTTCAAGCAAATCTGCCTTTCAGAGGCATAAACAGTGGTTGCAACATGCTAAAACACGGAGTGCGAGACACAAAATAATGAAGTTTCTAAGGGAACAAGCTGCACGCTCCGCTTCTGATATCACTACTGAAGCAGTCAATGACTTCGTTACTGACTCTGAGGGGGACAGCGAATCTGAAGAACTATCAAAAGGTTCCAGTGGTTCCAAATATCCGTGGGGTAAAACGTTTGTGAATGGAGAGGAAATATCAACGTCAACAAGAAATGAGACTGTCCTCCAAAGTAAAAATGGAAGTGTTTGGATCCCCAAGGTCAACGGGAAACATAATAAGCATGTGCAGCGTGAAAGTTTCAACGGAAAAGGGGAGACGTTACTGCAGGGAAACCTTGTTGCAAAGATGATTCAAGTTAACATTCCAAGATATAAGGAGGTCCTGCCAGGTTTAGAAAGTTGGCAAGCACAGAAAATTGCTTCCTGGCACAATATGGAAGGGCATTCCATCCAGTGGTTATCTGTAGTATGTATAGACCGAAGAGGCATGATGGCTGAGGTCACTACAGTATTGTCCACTGCAGGCATAGCCATATGTTCTTGTGTGGCTGAGATTGATGGAGGAAGGGGAATGGCTGTTATGGTATTTCACGTTGAAGGGAATTTAGAAAATTTGGTCAGTGCTTGCTCTAAAGTAGATCTGATATTGGGTGTTTTGGGATGGTCTACTGGTTGCAGCTGGCCGAGCTTAGTGGAAGACCGTGGCGTTCTCGAATGCTAG 2658 0.4289 MASASSMSVSLECVNACKLWRGDGSGKFDCSLLSCAWKAPRFLTGFLASTAHPPHQCSDLYNGRNGRRNRYNFGCEAFSVSGSCSDEPLDIVLFEGLSRSNMSQVAPRRGQLCCSSAFPSNIATDFSPKSLWEDLKPAISYLSSKELELVHNAFMLAFKAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNENDSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQASIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVAELYKEHEKELLEANKIFMKKIQDDQLLDLLTVKTEVRAVCKEPYSIYKAVLKSKSSISEINQIAQLRIVIKPKPCIGVGPLCNPQQICYHVLGLIHGIWTPIPRSVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGREFVTGLVGSATPSGKSSRGKTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPQGASVIDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAARSASDITTEAVNDFVTDSEGDSESEELSKGSSGSKYPWGKTFVNGEEISTSTRNETVLQSKNGSVWIPKVNGKHNKHVQRESFNGKGETLLQGNLVAKMIQVNIPRYKEVLPGLESWQAQKIASWHNMEGHSIQWLSVVCIDRRGMMAEVTTVLSTAGIAICSCVAEIDGGRGMAVMVFHVEGNLENLVSACSKVDLILGVLGWSTGCSWPSLVEDRGVLEC* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0734 885 ProSiteProfiles HD domain profile. 172 279 IPR006674 -
Vra3g0734 885 Gene3D - 798 864 - -
Vra3g0734 885 SUPERFAMILY ACT-like 798 857 IPR045865 -
Vra3g0734 885 Pfam TGS domain 566 625 IPR004095 -
Vra3g0734 885 Gene3D Beta Polymerase, domain 2 327 481 IPR043519 -
Vra3g0734 885 SUPERFAMILY HD-domain/PDEase-like 137 325 - -
Vra3g0734 885 Gene3D Hypothetical protein af1432 130 325 - -
Vra3g0734 885 SUPERFAMILY TGS-like 553 625 IPR012676 -
Vra3g0734 885 CDD HDc 170 301 IPR003607 -
Vra3g0734 885 Pfam HD domain 153 310 - -
Vra3g0734 885 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 1 885 - -
Vra3g0734 885 SMART RelA_SpoT_2 379 501 IPR007685 GO:0015969
Vra3g0734 885 ProSiteProfiles TGS domain profile. 562 625 IPR004095 -
Vra3g0734 885 CDD TGS_RSH 567 625 IPR033655 -
Vra3g0734 885 CDD NT_Rel-Spo_like 369 489 IPR007685 GO:0015969
Vra3g0734 885 Gene3D - 559 634 IPR012675 -
Vra3g0734 885 Pfam Region found in RelA / SpoT proteins 379 495 IPR007685 GO:0015969
Vra3g0734 885 SMART hd_13 168 288 IPR003607 -
Vra3g0734 885 ProSiteProfiles ACT domain profile. 798 869 IPR002912 -
Vra3g0734 885 SUPERFAMILY Nucleotidyltransferase 329 499 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0734 Vra-Chr3 7658919 7666921 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0734 182 497 EF-hand Containing Proteins AT3G17470 29.755 1.14e-36 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0734 K00951 - gmx:100814134 1608.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0734 3 7658919 7666921 Vra3g0734 3 7658919 7666921 ECH