Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0733 ATGTCTACTCAGCCAAAACCAAAGCTTGGTAGGCTTCCCAGTATCAGAGATCGTGTTGAAGACACTCTCTCTGCTCATCGTAACGAACTCATTTCTCTTCTCTCCAGGTATGTGGCTCAGGGGAAAGGGATTTTGCAACCTCATAACTTAATTGATGAACTTGACAACATCCCTGGGGACGATCAAGCAAAGTTGGATCTTAAAAATGGCCCCTTCGGTGAAATTATCAGGGCAGCACAGGAAGCCATAGTTTTGCCTCCTTTTGTGGCAATAGGAGTTCGTCCAAGACCTGGTGTTTGGGAATATGTCCGTGTTAATGTCTCTGAACTGAGCGTGGAGCAATTAAGCGTTGCTGAATATCTGAGCTTTAAGGAGGAACTTGTGGATGGAAAGAATAATGACAGTTTTGTACTGGAACTTGATTTTGAGCCATTCAATGCCTCATTCCCTCGTCCATCCCGTTCATCATCCATTGGCAATGGTGTCCAATTTCTCAATCGCCACCTTTCATCAATTATGTTCCGCAACAAAGATTCCTTGGACCCCTTGCTTGATTTCCTCCGAGCTCACAAGTATAAGGGCCATGCTCTGATGTTAAATGACAGAATACAGAACATTTCCAAACTCCAGACTGCTCTGGCCAAGACTGAGGATTATCTTAATAAGATTCCACGTGATACACCTTATTCAGAGTTTGAATACGAGTTACAAGGAATGGGCTTTGAGAGAGGATGGGGTGATACTGCTGAAAGGGTATTGGAAACGATGCATCTGCTACTGGATATTCTTCAGGCTCCTGATCCTTCTACCCTAGAGACTTTTCTTGGCAGAGTGCCAATGGTATTCAATGTTGTTATATTGTCTCCTCATGGCTTCTTCGGACAAGCCAATGTCTTGGGTTTGCCTGACACTGGTGGGCAGGTTGTTTATATACTAGATCAAGTGCGTGCCCTTGAGAATGAGATGCTCCTTCGGATTAAGAAACAAGGATTAGATTTCACTCCTAGAATTCTGATTGTTACCAGGCTAATACCCGATGCAAAGGGGACAACTTGCAACCAACGACTAGAAAGAGTCAGTGGTACCGAGCACACTCATATTTTGCGAGTTCCATTCAGATCAGAGTCAGGAACTCTCCGTAAATGGATTTCAAGGTTTGATGTGTGGCCTTATCTAGAGACTTATTCAGAGGACGTTGCCAGTGAAATTGCTGCTGAGTTACAAGGCTATCCTGACTTCATCATTGGAAACTACAGTGATGGGAATCTTGTTGCATCTTTATTGGCTTATAAAATGGGAGTTACACAGTGCACCATCGCTCATGCACTTGAGAAGACAAAATATCCAGATTCAGATATATACTGGAAGAAATTTGATGACAAATATCACTTTTCATGCCAGTTCACTGCTGATTTAATAGCCATGAATAACGCTGATTTTATCATCACCAGTACCTACCAAGAGATTGCAGGAACGAAAAATACAGTTGGACAGTATGAGAGCCACACTGGTTTTACTCTTCCTGGGCTGTACAGGGTTGTCCATGGCATTGATGTTTTTGATCCCAAGTTCAATATTGTTTCTCCTGGAGCAGATATGTCAATATATTTCCCCTACTCTGAAAAGCAGAACAGGCTTACATCCCTGCACGGTTCCATTGAACAGCTACTGTATGATCCAACACAGACTGATGACTACATTGGAACACTGAAAGACAAGTCAAAGCCCATAATTTTCTCCATGGCAAGGCTAGACAGAGTGAAGAACATGACAGGATTGGTTGAATTATTTGGTAAGAGCAGCAAATTGAGGGAGCTGGTCAACCTTGTTGTAGTAGCTGGTTACATTGATGTAAAGAAGTCCAGCGACAGAGAAGAAATTGCAGAAATTGAGAAGATGCACGCTCTCATCAAAGAGTACAACTTAAACGGTGATTTTCGTTGGATTGCTGCTCAAACAAATAGGGCACGTAACGGGGAGCTGTATCGCTACATAGCAGACACACAAGGTGCTTTCGTTCAGCCTGCATTCTATGAAGCTTTTGGGCTTACAGTTGTGGAAGCCATGACCTGTGGACTCCCCACATTTGCTACTAGCAATGGTGGTCCAGCTGAGATCATCGAACATGGTATATCAGGATTTCACATTGATCCTTATCACCCTGATCAAGCTTCAGAGCTATTGGTTGAATTCTTCCAAACCTGCAAGACTGACCCAAGCCATTGGAAGAAAATATCTGATGGTGGTCTTAAAAGAATTTATGAAAGCTACACTTGGAAGATTTATTCCGAAAGGCTCTTGACCTTGGCGGGAGTTTACAGTTTCTGGAAATACGTTTCCAAATTGGAGAGGCGTGAAACTCGACGATATCTTGAGATGTTCTATATCCTCAAGTTCCGTGATTTGGCAAAATCTGTGCCCCTAGCAAAAGATGATGCAAGTTAA 2445 0.4294 MSTQPKPKLGRLPSIRDRVEDTLSAHRNELISLLSRYVAQGKGILQPHNLIDELDNIPGDDQAKLDLKNGPFGEIIRAAQEAIVLPPFVAIGVRPRPGVWEYVRVNVSELSVEQLSVAEYLSFKEELVDGKNNDSFVLELDFEPFNASFPRPSRSSSIGNGVQFLNRHLSSIMFRNKDSLDPLLDFLRAHKYKGHALMLNDRIQNISKLQTALAKTEDYLNKIPRDTPYSEFEYELQGMGFERGWGDTAERVLETMHLLLDILQAPDPSTLETFLGRVPMVFNVVILSPHGFFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKKQGLDFTPRILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSESGTLRKWISRFDVWPYLETYSEDVASEIAAELQGYPDFIIGNYSDGNLVASLLAYKMGVTQCTIAHALEKTKYPDSDIYWKKFDDKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTGFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYSEKQNRLTSLHGSIEQLLYDPTQTDDYIGTLKDKSKPIIFSMARLDRVKNMTGLVELFGKSSKLRELVNLVVVAGYIDVKKSSDREEIAEIEKMHALIKEYNLNGDFRWIAAQTNRARNGELYRYIADTQGAFVQPAFYEAFGLTVVEAMTCGLPTFATSNGGPAEIIEHGISGFHIDPYHPDQASELLVEFFQTCKTDPSHWKKISDGGLKRIYESYTWKIYSERLLTLAGVYSFWKYVSKLERRETRRYLEMFYILKFRDLAKSVPLAKDDAS* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0733 814 Gene3D Glycogen Phosphorylase B; 285 802 - -
Vra3g0733 814 Pfam Glycosyl transferases group 1 569 733 IPR001296 GO:0016757
Vra3g0733 814 Pfam Sucrose synthase 11 558 IPR000368 GO:0005985|GO:0016157
Vra3g0733 814 TIGRFAM sucr_synth: sucrose synthase 27 808 IPR012820 GO:0005985|GO:0016157
Vra3g0733 814 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 300 768 - -
Vra3g0733 814 Gene3D - 14 150 - -
Vra3g0733 814 Gene3D - 151 280 - -
Vra3g0733 814 Gene3D Glycogen Phosphorylase B; 532 759 - -
Vra3g0733 814 PANTHER SUCROSE SYNTHASE 6 814 - -
Vra3g0733 814 PANTHER - 6 814 IPR012820 GO:0005985|GO:0016157
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0733 Vra-Chr3 7634730 7640047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0733 7 812 Glycosyltransferase AT4G02280 81.886 0.0 1419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0733 K00695 - gmx:100793371 1526.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0733 3 7634730 7640047 Vra3g0733 3 7634730 7640047 ECH