Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0720 ATGCTTTCCTCCAAACCACCGCGTCGGAAAATTGTTCCGGCGAACGGAGATGAGTCCGCTGACAAACTGGACCAGCTTCTCTTGTCCTCCGCCATCTGCAACAACGAGGACATAGGCCCGTTCATCCGCAAGGCCTTCGCCTCCGGAAAGCCGGAGACGCTCCATCACCATCTCCGTCACTTTGCGCGCTCGAAGGAGTCCGAGATTGAGGAAGTGTGCAAGGCTCACTACCAGGACTTCATCCTCGCCGTCGACGATCTACGATCCCTCCTATCAGACGTCGATTCGCTCAAGTCCTCCCTCTTCGATTCCAACTCGCGGCTCCAGTCCGTTGCGCGCCCGCTCCTGTCGTCGCTCGACGCCTTCGTCGAGACGCGGAACGTCTCGAAGAACGTGAACCTCGCTATCGACTCCATCCGCACTTGCGTCAAGCTGATGGAGGTTTGCACGCGCGCCAACCGCCACCTCGCGGACGACAACTTTTACATGGCGCTGAAGTGCGTGGACGCGATCGAGCGGGAGTATTTGGATAAAACGGAGTCATCCACGCTGAAGCGGATGCTGGAGAAGAAGATTCCAGAGATTCGATCGTACATCGAAAGGAAGGTGAACAAGGAGTTTGGCGACTGGTTGGTGGAGATCCGAGTCGTGAGTCGCAATTTAGGTCAATTGGCGATAGGTCAAGCCTCGTCAGCGAGGCAGAGAGAAGAGGATCTAAGAATTAAACAGCGCCAAGCGGAGGAACAGAGTAGACTCAGCGTGAGAGACTGTATTTACGCTTTAGAGGAAGAGGAAGAAGACGAAATTATCGCTGGCGGGATCGGCGAAGACGGCGGTGGAGTCGCCGGGTTTGATTTGACTTCCTTGTACAGGGCATACCATATTCATCAGACTTTAGGGTTAGAGGATCGGTTTAAACGGTATTATTTCGAGAACCGAAAGCTTCAGTTGACTTCGGACTTTCAGGTCTCGTCGATGACTCCTTTTCTGGAGTCGCATCAAACGTTCTTTGCGCAGATTGCAGGGTTCTTTGTGGTGGAGGATCGCGTGTTCAGAACCGGAGGTGGGTTGATTTCAAAATTGGAGGTTGAGAATCTGTGGGAGATTGCTGTTAGTAAGATGTGTTCAGTGTTGGAGGATCAGTTCTCCAGAATGCAAACTGCTAATCATCTTTTGCTTATTAAGGATTATGTGAGTCTGTTAGGAGTAACCCTGCGGCGATACGGGTACCCCATTGATGCGTTGCTTGATGTTTTGAGCAAACACAGGGATAAGTACCACGAACTCCTTTTGTCTGATTGTAGGAAGCAGATTGCGGAGGCGGTTGCGGCTGATAAATTTGAGCAAATGCTGATGAAAAAAGAGTATGAGTATTCCATGAATGTGCTTTCTTTCCAGATACAGACTACTGATATCATACCAGCTTTTCCCTATGTTGCCCCCTTTTCAACCACTGTGCCAGATTGTTGTCGGATTGTACGGTCATTCATTGAGGATTCTGTGAGTTTCATGTCTTATGGCGGGCAACTTGAGTTCTATGAAGTTGTTAAGAAATATTTAGACAGGCTTTTGATTGAGGTTTTGGATGAAGCTTTAGCGAAGCTTATCAATACCTCGATTACTGGTGTCTCCCAGGCAATGCAAATGGCAGCGAATATGGCTGTCTTGGAGCGTGCTTGTGATTTTTTCTTCCGCCATGCAGCACAGCTTTCGGGTGTTCCCCTGAGAATGGTGGAGAGAAGCAGAAGGCAGTTTCCCCTAAGAAAAGCTCGTGATGCTGCAGAAGAGATGCTCTCTGGGCTACTCAAAGCCAAGGTTGATGGATTTATGGCCTTGATCGAGAATGTAAATTGGATGTGTGACGAGGCTCCTCAGAGTGGAAATGAATATGTAAATGAGGTTATAATTTATTTGGAAATTTTGGTTTCAACTGCTCAACGGATATTGCCATCTCAAGTCCTTAAGAGAGTATTGCAAGAAGTTTTTGCTCACATATCCGACAAGATAGTTGGGACTTTAGTCAGTGATTCTGTTAAAAGGTTTAATGTCAATGCTATTAATGGAATTGAAGTAGATATTCGGCTCTTAGAATCATTTGCTGATAATCAGGCCTCTCTTTTCTCTGATGGGGATGTTGATGTTTTGAAAGCATCACTTACCAGTTCAAAGCAACTGATTAATTTGCTATTAAGTAATCATCCGGAGAACTTCTTGAATCCAGTGATAAGGGAGAGGAGCTACAACACTTTGGACCACAAGAAAGTGATGATTGTTTCAGAAAAGTTGAGGGATCCTTCAGATCGGCTCTTTGGAACCTTTGGTAGTCGTGGGGCCAGGCAGAATCCGAAAAGGAAATCGTTGGATACGTTGATAAAAAGACTTAAGGATGTTAGCTGA 2397 0.4727 MLSSKPPRRKIVPANGDESADKLDQLLLSSAICNNEDIGPFIRKAFASGKPETLHHHLRHFARSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSSLFDSNSRLQSVARPLLSSLDAFVETRNVSKNVNLAIDSIRTCVKLMEVCTRANRHLADDNFYMALKCVDAIEREYLDKTESSTLKRMLEKKIPEIRSYIERKVNKEFGDWLVEIRVVSRNLGQLAIGQASSARQREEDLRIKQRQAEEQSRLSVRDCIYALEEEEEDEIIAGGIGEDGGGVAGFDLTSLYRAYHIHQTLGLEDRFKRYYFENRKLQLTSDFQVSSMTPFLESHQTFFAQIAGFFVVEDRVFRTGGGLISKLEVENLWEIAVSKMCSVLEDQFSRMQTANHLLLIKDYVSLLGVTLRRYGYPIDALLDVLSKHRDKYHELLLSDCRKQIAEAVAADKFEQMLMKKEYEYSMNVLSFQIQTTDIIPAFPYVAPFSTTVPDCCRIVRSFIEDSVSFMSYGGQLEFYEVVKKYLDRLLIEVLDEALAKLINTSITGVSQAMQMAANMAVLERACDFFFRHAAQLSGVPLRMVERSRRQFPLRKARDAAEEMLSGLLKAKVDGFMALIENVNWMCDEAPQSGNEYVNEVIIYLEILVSTAQRILPSQVLKRVLQEVFAHISDKIVGTLVSDSVKRFNVNAINGIEVDIRLLESFADNQASLFSDGDVDVLKASLTSSKQLINLLLSNHPENFLNPVIRERSYNTLDHKKVMIVSEKLRDPSDRLFGTFGSRGARQNPKRKSLDTLIKRLKDVS* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0720 798 Pfam Exocyst complex subunit Sec15-like 458 762 IPR046361 -
Vra3g0720 798 PANTHER EXOCYST COMPLEX COMPONENT SEC15B 7 798 - -
Vra3g0720 798 Gene3D - 412 584 IPR042045 -
Vra3g0720 798 Gene3D Dsl1p vesicle tethering complex, Tip20p subunit, domain D 590 737 IPR042044 -
Vra3g0720 798 Coils Coil 229 249 - -
Vra3g0720 798 PIRSF Sec15 4 798 IPR007225 GO:0006886|GO:0090522
Vra3g0720 798 PANTHER SEC15 7 798 IPR007225 GO:0006886|GO:0090522
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0720 Vra-Chr3 7551576 7554357 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0720 K19985 - gmx:100796432 1450.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0720 3 7551576 7554357 Vra3g0720 3 7551576 7554357 ECH