Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0702 ATGTTAGAAAAGTGTTTGGGAGCTCAAAGGGCGCGAAGATTCCAGAGAGCTCTCAGGCATTGCAAGGTCACCATCCTCTGCCTGCTCCTCACCATCGTTGTCCTGCGCGGCACCATCGGTGCTGGAAAATTCGGCACGCCGGAGCAGGACTTCATCGACATTCGCAACCGTTTCTACTCCCGCAAGCTCCCTGAGAATTACCGCCACCTCGGTGAGCTTCAATCCACGACGTCCAACGATTCCAATTCCACCACCGACTACAATGCCTTTGACATCAACACCATATTGGTCGACGAACCAGAAGACGTGAACCGCGAGAAATTGAATCCGGAAGAGCCGTATCGTCTCGGCCCCAAAATATCGACCTGGGACGAGCAACGATCTCGCTGGCTTCGCAATAACCCCAATTTATCTAATTTCGTTCTGCCCAACAAGCCTCGTGTGCTTCTGGTAACTGGGTCATCGCCGAAACCCTGCGAGAATCCCGTTGGGGATCATTACTTGTTGAAGTCAATTAAGAACAAAATTGACTATTGTCGTTTGCATGGGATTGAGGTGTTTTACAACATGGCTCTCCTTGACGCTGAGATGGCAGGGTTCTGGACCAAGCTTCCTTTGATTCGGAAGCTTCTTTTGTCTCACCCTGAGGTGGAGTTTATATGGTGGATGGATAGTGATGCCATGTTCACGGACATGGCGTTTGAGGTGCCGTGGGAGAGGTATAAAGACCATAACTTGGTGATGCATGGATGGGATGAAATGGTTTATGATGAGAAGAATTGGATTGGGCTGAACACTGGGAGTTTTCTGCTGAGAAATTGTCAGTGGTCTTTGGATATTCTCGATGCTTGGGCTCCAATGGGGCCTAAAGGGAGGGTTAGGGATGAGGCTGGGAAAGTGCTGACGCGTGAGCTCAAGGATAGACCTGTTTTCGAAGCTGATGATCAATCTGCCATGGTTTATCTGCTGGCTAAGGATAGGGAGAAATGGGGTGATAAAGTTTATCTTGAGAACGATTATTACTTGCATGGTTATTGGGGGATTTTGGTTGATAAGTACGAGGAAATGATTGAGAATTACCATCCTGGTCTCGGGGATCATAGGTGGCCATTGGTGACTCATTTTGTGGGGTGCAAGCCTTGTGGGAAGTTTGGGGATTACCCTGTTGAAAGGTGCTTGAAGCAGATGGATAGGGCCTTCAATTTTGGAGATAATCAGATTTTGCAGATTTATGGATTTACGCATAAGTCTTTGGCTAGTAAAGAAGTTAAGAGAATACGGGAGGAGACTAGCAATCCCCTTGAAGACAAGGATGAACTTGGGTTGCTTCATCCAAACATTTAA 1344 0.4762 MLEKCLGAQRARRFQRALRHCKVTILCLLLTIVVLRGTIGAGKFGTPEQDFIDIRNRFYSRKLPENYRHLGELQSTTSNDSNSTTDYNAFDINTILVDEPEDVNREKLNPEEPYRLGPKISTWDEQRSRWLRNNPNLSNFVLPNKPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRLHGIEVFYNMALLDAEMAGFWTKLPLIRKLLLSHPEVEFIWWMDSDAMFTDMAFEVPWERYKDHNLVMHGWDEMVYDEKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGRVRDEAGKVLTRELKDRPVFEADDQSAMVYLLAKDREKWGDKVYLENDYYLHGYWGILVDKYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAFNFGDNQILQIYGFTHKSLASKEVKRIREETSNPLEDKDELGLLHPNI* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0702 447 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 144 296 IPR029044 -
Vra3g0702 447 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE-RELATED 4 446 - -
Vra3g0702 447 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 5-RELATED-RELATED 4 446 IPR008630 GO:0016021|GO:0016757
Vra3g0702 447 Pfam galactosyl transferase GMA12/MNN10 family 145 384 IPR008630 GO:0016021|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0702 Vra-Chr3 7408533 7410243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0702 1 445 Glycosyltransferase AT4G02500 79.425 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0702 K08238 - gmx:100794266 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0702 3 7408533 7410243 Vra3g0702 3 7408533 7410243 ECH