Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0697 ATGGCTGTGGTTGCAGTGCAGCAATTCGTGTGCTTCGCAGATTCAAATTGGAGGAATATAGCAAGACCATGCATTCCCTCTCACACTACGATTCTTCTACATTCACGCAAAAAAATTCAATTTTCTCTGATTTCATGCTCTTCATCACAGACACCAGAAGTTGGTACTCAAACCGCTGAATCCTGCGTCAATTTGGGTCTCGAGCTCTTCTCCAAAGGAAGGGTAAAAGATGCTTTAACCCAATTTGAAACTGCACTTTCCCTGAACCCTAATCCAGTGGAGGCCCAAGCTGCCTACTACAACAAAGCTTGCTGCCATGCATACAGGGGAGAAGGAAAGAAAGCAGCTGATTGTCTCCGCACTGCTTTGAAGGAATACAACCTGAAATTTGGTACCATACTCAATGATCCTGATTTGGCCTCCTTCAGAGCTTTGCCTGAATTCAAGGAACTACAAGAAGAGGCTAGGCTTGGCGGGGAGGATATTGGCTACAGTTTTCGGCGAGATCTAAAACTTATTAGTGAAGTTCAAGCACCATTTCGTGGGGTTAGGAGATTTTTTTATATAGCACTGACAGCAGCTGCAGGAATATCATTGTTTTTTACTGTGCCCAGGCTAATTCGTGCAATTAGTGGTGGTGATGGTGCTCCTGATCTCTTGGCAACTTCTGGGAATGCTGCCATTAATATTGGAGGTATTGTTGTTCTTGTGGCATTGTTCTTTTGGGACAATAAAAAAGAGGAGGAACAACTTGCACAAATATCTCGAGATGAGACACTATCAAGGTTGCCTTTGCGGCTTTCAACTAATCGAGTAGTTGAACTTGTGCAGCTACGGGATACAGTTAGACCAGTTATATTAGCAGGAAAAAAGGAAACAGTGTCTCAGGCTATGCAAAGAGCCGAGAGATTTCGCACGGAGCTCCTTAAACGTGGTGTTCTGTTAGTTCCTGTTATCTGGGGAGAAGGTCGGGAAACAAAAATTGAGAAAAAAGGATTTGGTCTGCAGCCAAAAGCTGCTGAATCTCTTCCATCTATTGGGGAAGATTTTGAGAAGCGAGCACAATCCATAACTGCAAAATCGAAGTTGAAATCTGAAATTAGGTTCAAGGCTGAGGTTGTGTCTCCTGCAGAATGGGAAAGGTGGATAAGAGATCAACAGAAATCTGAAGGAGTTTCACTCGGTGAAGATGTGTACATAATACTAAGGTTAGATGGAAGAGTTCGAAGATCAGGGAAAGGTATGCCTGATTGGCAGCAAATTGTAAAGGAGCTACCACCAATGGAAGCATTTTTAAGCAAGCTGGAAAGATGA 1314 0.433 MAVVAVQQFVCFADSNWRNIARPCIPSHTTILLHSRKKIQFSLISCSSSQTPEVGTQTAESCVNLGLELFSKGRVKDALTQFETALSLNPNPVEAQAAYYNKACCHAYRGEGKKAADCLRTALKEYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYSFRRDLKLISEVQAPFRGVRRFFYIALTAAAGISLFFTVPRLIRAISGGDGAPDLLATSGNAAINIGGIVVLVALFFWDNKKEEEQLAQISRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSQAMQRAERFRTELLKRGVLLVPVIWGEGRETKIEKKGFGLQPKAAESLPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPAEWERWIRDQQKSEGVSLGEDVYIILRLDGRVRRSGKGMPDWQQIVKELPPMEAFLSKLER* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0697 437 Pfam Low psii accumulation1 / Rep27 167 244 IPR021883 -
Vra3g0697 437 ProSiteProfiles TPR repeat profile. 59 92 IPR019734 GO:0005515
Vra3g0697 437 Pfam Tetratricopeptide repeat 59 91 IPR013105 -
Vra3g0697 437 Gene3D Tetratricopeptide repeat domain 47 144 IPR011990 GO:0005515
Vra3g0697 437 SMART tpr_5 96 129 IPR019734 GO:0005515
Vra3g0697 437 SMART tpr_5 59 92 IPR019734 GO:0005515
Vra3g0697 437 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 37 437 - -
Vra3g0697 437 SUPERFAMILY TPR-like 57 125 IPR011990 GO:0005515
Vra3g0697 437 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 37 437 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0697 - - gmx:100784188 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0697 3 7389135 7393718 Vra3g0697 3 7389135 7393718 ECH