Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0691 ATGAACGACAGAGTGAGAAGTGTGATTTTTCTGCTTCAGAACTTTTGTGACAGTCAGAAGCAAGTTCGGCAGATAAATGCTCAACTCATCCGCCGTAACCTCTATCCAAACACCAGAATCGCAGAGCACTTCATCGGCGCGTGCTATTCACACGGCCTTATAAACTCCGCTCTTCTTCTCTTCACCACGCTCCTCCCTTCTCCCCATGTTTACATCTTCAACACCCTCATCAGAGTCTTCTCCCAATCCCAAACCCCACACACCCCTCTCTTAATCTACGCCCACATGCGCCGCAACAACGTTCTCCCCAACAACTTCACTTTCCCACCTCTCTTCAAGGCCCTCTCCGACGCCTGCCACGTCACCCAAGCCCACTGCGTCCACACCCACGTCCTCAAACTCGGCCACCACCAAGACCTCTTCGTTGGCAACGCCCTCCTCGACGTCTACGCCACGAGCCGCCAAGTGGGGTTGTGCCGCAGCCTCTTCGATGAAATGCTTCAGAGAGATGTCGTCTCCTGGAGCGTGTTGATCGCCGGGTTCAACAACGTTGGGAACTATGATGATGCCTTGGTTGTGTTTGAACAAATGCAGTATGCGGGTTTTGTGCCTAATAGGGTCACGATGATCAACGCCTTGCATGCTTGCGCTCACTCTGGTAATGTTGAAATGGGGGCGTGGATACATGGGGCTGTAAAAAGGGGGGGTTGGGAATTGGATGTCATACTGGGGACGGCTTTGGTTGACATGTATGGGAAATGTGGGAGAGTTGAGGATGGGTTGAGTGTGTTCTGGAGTATGAAGGAAAAAAATGTGTTTACTTGGAATGCCGTTGTAAAAGGGTTAGCTTTGGCTAAGAGTGGACAAGAGGCGATTCGGTGGTTTAACAGAATGGAGAAGGAGGGTGTTAGAGCGGATGAAGTGACTTTGTTGGCGGTTTTATCTGCGTGCAGTCACTCGGGTTTGGTGGACAAGGGTAGGGAGATTTTTGGTTTGTTGGTTGATGGGAGGTATGGCTTTTGCCCTAATGTTAAACACTATGCTTGTATGGTTGACGTGTTGGCGCGTTCTGGGCGTTTGCATGAAGCTGTTGAGTTCATGGGACGCATGCCTTTTGGACCCACCAAAGCTATGTGGGGATCGTTGTTATTTGGTTCTAAAGTTCAGGGTGACTTGGAGTTGGGCCTGCTGGCGGCTGAAAAGCTCATTGAATTGGATCAGGAGAACTCTACCTATTACGTTCATCTCTCGAATATGTATGCTGCAATGGGCAGATGGGCGGATGTTGAGAAAGTGAGAGGGGTGATGAAGGATAGACAACTGACTAAGGACTTGGGGTGTAGTTCTCTGGAGGTAGAACACCAAAGACATGTAAACGAATTTTTGGCGTAG 1392 0.4993 MNDRVRSVIFLLQNFCDSQKQVRQINAQLIRRNLYPNTRIAEHFIGACYSHGLINSALLLFTTLLPSPHVYIFNTLIRVFSQSQTPHTPLLIYAHMRRNNVLPNNFTFPPLFKALSDACHVTQAHCVHTHVLKLGHHQDLFVGNALLDVYATSRQVGLCRSLFDEMLQRDVVSWSVLIAGFNNVGNYDDALVVFEQMQYAGFVPNRVTMINALHACAHSGNVEMGAWIHGAVKRGGWELDVILGTALVDMYGKCGRVEDGLSVFWSMKEKNVFTWNAVVKGLALAKSGQEAIRWFNRMEKEGVRADEVTLLAVLSACSHSGLVDKGREIFGLLVDGRYGFCPNVKHYACMVDVLARSGRLHEAVEFMGRMPFGPTKAMWGSLLFGSKVQGDLELGLLAAEKLIELDQENSTYYVHLSNMYAAMGRWADVEKVRGVMKDRQLTKDLGCSSLEVEHQRHVNEFLA* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0691 463 Gene3D Tetratricopeptide repeat domain 88 228 IPR011990 GO:0005515
Vra3g0691 463 Pfam E motif 391 451 IPR046848 -
Vra3g0691 463 PANTHER - 8 458 - -
Vra3g0691 463 Pfam PPR repeat family 270 318 IPR002885 -
Vra3g0691 463 Pfam PPR repeat family 169 217 IPR002885 -
Vra3g0691 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Vra3g0691 463 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 8 458 - -
Vra3g0691 463 TIGRFAM PPR: pentatricopeptide repeat domain 172 205 IPR002885 -
Vra3g0691 463 TIGRFAM PPR: pentatricopeptide repeat domain 273 306 IPR002885 -
Vra3g0691 463 Gene3D Tetratricopeptide repeat domain 229 328 IPR011990 GO:0005515
Vra3g0691 463 Pfam PPR repeat 339 370 IPR002885 -
Vra3g0691 463 Gene3D Tetratricopeptide repeat domain 335 459 IPR011990 GO:0005515
Vra3g0691 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0691 Vra-Chr3 7359489 7361853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0691 91 457 Glycoside Hydrolase AT3G49170 32.153 9.61e-62 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0691 - - gmx:102664320 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0691 3 7359489 7361853 Vra3g0691 3 7359489 7361853 ECH