Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0680 ATGCTTCACCGCATGACCCATTCCTCTTCTCCCTCTCTTCTCCTCCTACCACGTCTTCTCTCTCACCAACCCTTCCTTTCTTCAAATTTCAAATTCCCTTTCCCACTCTCACCAAAACGTCTCACTCTCAACCTCATCCCCATGGCTTCCTATCATTCCCTCCACAACCACACAAACCGACTCGCTTCCGAACAGAGTCCTTACCTTCTCCAACACGCACACAACCCTGTTGATTGGTATCCGTGGGGCGAAGAAGCCTTCGCCGAAGCGCGCAGGCGCGACGTGCCTATCTTCTTATCTACTTTGCCTGTGCTGTTCTTGACGGCGATTCCGTTCGAAGTTGGCTACAGCACTTGTCACTGGTGTCACGTTATGGAGGTCGAGTCTTTCGAAGACGCAGCGGTTGCCAAGTTGTTGAACGATTGGTTTGTTAGCATTAAGGTGGATCGAGAGGAACGACCGGATGTTGATAAGGTATACATGACGTATGTACAGGCTTTGTACGGTGGAGGAGGTTGGCCTCTGAGTGTGTTTCTTTCCCCCGACTTGAAGCCTTTAATGGGTGGAACTTACTTCCCCCCTGATGATAAGTACGGGCGACCTGGATTTAAGACTATACTAAGAAAGGTAAAACAGGCTTGGGATAGTAAGAGGGATATGCTGATTAAGAGTGGAGCATTTGCAATAGAGCAGCTTTCTGAGGCAATGTCTGCTAGTGCAGATACTGATAAACTGCCCGATGGGGTTCCGGCTGATGCATTACGTCTGTGCTCAGAGCAGCTCTCTGGGTCCTATGATCCAAAGTTTGGTGGGTTTGGATCTGCACCAAAGTTTCCTAGACCAGTTGAGATAAACTTGATGCTATATCACTCCAAAAAGTTGGAGGAGGCAGGAAAGTTGGATGGAGCTAATGGAAGTCAGAAAATGGTTTTCTTTAGCTTGCAATGCATGGCAAAAGGCGGGATTCATGATCATATTGGAGGTGGCTTTCACAGATACAGCGTGGATGAGTGCTGGCACGTTCCACATTTTGAGAAGATGCTATATGATCAAGGGCAGCTTGCTAATGTTTATCTAGATGCGTTTTCTATCACTAAAGATAACTTCTATTCATATATATCACGGGGTATCCTTGACTATTTAAAGAGAGATATGATTGGTCCAGAGGGTGAAATCTTTTCAGCAGAGGATGCTGACAGTGCAGAGACTGAAGGAGCTGCAAGAAAAAAGGAAGGAGCCTTTTACATATGGGAAAGCAAAGAGGTTCAAGACATACTTGGAGAGCATGCTGCTCTTTTTGAGGAGCACTATTACATAAAGCAATCTGGTAACTGTGATCTGTCTGAAATGAGTGATCCTCACAATGAATTCAAAGAAAAGAATGTCCTAATTGAGAGAAAGGAACCTTCAGAACTGGCATCAAAATATGGCATGTCAGTTGAGACGTATCAAGAAATTCTTGGAGAATGTAGGCGTAAGTTGTTTGAAGCAAGGTCAAGGCGTCCAAAGCCACATTTGGACGACAAGGTTATTGTATCTTGGAATGGATTGGCAGTCTCTTCTTTTGCCAGGTCTTCTAAGATTCTCAAGGGCGAAGTGGAAGGGTCCAAATTCTACTTTCCTGTTGTTGGCACTGAGCCAAAGGAGTACTTGAAAATTGCAGAAAAAGCAGCATTTTTTATTAGGAAGCATCTTTATGATGTGGAGACTCGCAGGCTATACCATAGTTTCAGACGTTCTCCATCTAAAGCTCCTGGTTTCTTGGATGACTATGCTTTTCTGATTTCAGGATTGCTGGATCTGTATGAGTTTGGTGGTGGAATTAGCTGGCTTCTATGGGCCATTGAATTGCAGGAAACCCAGGATTCTTTGTTTCTTGATAAGGCTGGAGGTGGATATTTCAATAATACAGGAGAAGATTCTTCAGTTCTCCTCCGTGTGAAGGAAGATCATGATGGGGCAGAACCATCTGGAAACTCGGTTTCTGCTATAAACCTTATAAGATTGGCATCCGTGGTTTCTGGAAGTATGGCTGAGAATTATAAGCGAAATGCAGAACATCTATTGGCAGTTTTTGAGAAAAGATTGAAAGATATGGCTATGGCAGTGCCTCTAATGTGCTGTGCAGCAGACATGTTGCGCGTACCTTCTCGGAAACAAGTTGTCGTGGTTGGTGGAAGGACGTCTGAAGAATTTGAAAACATGCTTGCGGCAGCTCATGCATTATATGACCCCAACAGAACAGTTATTCATATAGACCCCAGCAACAAAGAAGAGATGGAATTTTGGGAAGTAAATAACAACAATGTCTCTCTCATGGCAAAAAATAACTATGACGTCAACAAGGTTATAGCTCTTGTTTGCCAAAACTTCACCTGTAGCCCCCCCTTGACTGATCCTTCTTCACTTGAAGCTGTACTCTCCAAAAAACCTTCCTCTTAG 2442 0.4435 MLHRMTHSSSPSLLLLPRLLSHQPFLSSNFKFPFPLSPKRLTLNLIPMASYHSLHNHTNRLASEQSPYLLQHAHNPVDWYPWGEEAFAEARRRDVPIFLSTLPVLFLTAIPFEVGYSTCHWCHVMEVESFEDAAVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPDDKYGRPGFKTILRKVKQAWDSKRDMLIKSGAFAIEQLSEAMSASADTDKLPDGVPADALRLCSEQLSGSYDPKFGGFGSAPKFPRPVEINLMLYHSKKLEEAGKLDGANGSQKMVFFSLQCMAKGGIHDHIGGGFHRYSVDECWHVPHFEKMLYDQGQLANVYLDAFSITKDNFYSYISRGILDYLKRDMIGPEGEIFSAEDADSAETEGAARKKEGAFYIWESKEVQDILGEHAALFEEHYYIKQSGNCDLSEMSDPHNEFKEKNVLIERKEPSELASKYGMSVETYQEILGECRRKLFEARSRRPKPHLDDKVIVSWNGLAVSSFARSSKILKGEVEGSKFYFPVVGTEPKEYLKIAEKAAFFIRKHLYDVETRRLYHSFRRSPSKAPGFLDDYAFLISGLLDLYEFGGGISWLLWAIELQETQDSLFLDKAGGGYFNNTGEDSSVLLRVKEDHDGAEPSGNSVSAINLIRLASVVSGSMAENYKRNAEHLLAVFEKRLKDMAMAVPLMCCAADMLRVPSRKQVVVVGGRTSEEFENMLAAAHALYDPNRTVIHIDPSNKEEMEFWEVNNNNVSLMAKNNYDVNKVIALVCQNFTCSPPLTDPSSLEAVLSKKPSS* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0680 813 PIRSF UCP006402_thioredoxin 47 813 IPR024705 -
Vra3g0680 813 CDD SSP411 80 215 IPR004879 -
Vra3g0680 813 SUPERFAMILY Six-hairpin glycosidases 260 654 IPR008928 GO:0005975
Vra3g0680 813 Pfam Protein of unknown function, DUF255 58 231 IPR004879 -
Vra3g0680 813 SUPERFAMILY Thioredoxin-like 57 198 IPR036249 -
Vra3g0680 813 PANTHER SPERMATOGENESIS-ASSOCIATED PROTEIN 20 51 809 IPR024705 -
Vra3g0680 813 Gene3D - 542 747 IPR012341 GO:0005975
Vra3g0680 813 Gene3D Glutaredoxin 56 241 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0680 - - gmx:100777751 1412.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0680 3 7261599 7268177 Vra3g0680 3 7261599 7268177 ECH