Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0679 ATGTACGCGCCCTTCCCTTCTCTATCCAGTCACTCTGTGGCCATGAATAGCTTAACGGCGAGTTTCACAGCTCGGATATGCGTCACGCGCCGCGACCTACTCCATGTGCGACGCCGTTCCACATTCAGCCGCGTCGCCATCAAACTCACACATCCAAGAATCGTTTGCATGGCGGAACCTTATCTGATAACGAAGTTAGATTCTGCGGAGAAAACCTGGAAAGAATTATCGGTCAAGCTTGCTGATCCAGACATTGTGTCTGATCCAAAGGAGTATCAGAAGCTAGCACAATCAGTGGCAGAGCTTGACGAGGTTGTGTCCGTCTATAGGAAATTTAAGGACTGTGAGAAGCTTCTAGAAGAAACCAAAGCTTTAGCGAAGGATGCTGGAAATGATGAGGATATGGTGGAGATGATATCTTATGAAATCGAATCGCTGTCCAAGCAACTCGCTGAGCTTGAGGACCGGCTTAAGGTGCTACTGCTTCCCAGTGATCCTCTGGATGCTAGAAACATAATGATTGAAGTACGAGCAGGAACTGGTGGTGACGAGGCTGGAATTTGGGCTGGTGATCTTGTTCGAATGTATGAAAGATATAGTGAAAGGAATTCTTGGAAATATTCTCTCGTCTCAAGCTCTGCGGCAGAAAAAGGAGGATACAAAACTTATGTAATGGAGATAAAAGGAAATCGTGTTTACAGTAAATTGAAATATGAATCTGGCGTTCACCGAGTTCAACGTGTTCCTCTAACAGAAGCACAGGGCCGGGTACATACTTCTACTGCAACAGTGGCTATCATGCCAGAGGCTGATGAAGTTGAAGTCGTAATTGACCCCAAAGATATTGAACTGACTACTGCACGTTCTGGGGGTGCTGGAGGTCAGAACGTAAACAAGGTTGAAACAGCCATTGATCTCTTCCATAAACCAACGGGAATCCGCATCTTTTGTACCGAAGAAAGAACACAACTTAAAAACAAGAATCGTGCATTTCAGTTGCTCCGAGCAAAACTATATGAGATCAAGGTAAGGGAACAGCAAGAGTCATTACGAAACCAAAGGAAATCACAGGTCGGTACAGGTGCCCGAGCAGAAAAAATTCGGACATACAATTATAAGGACAACAGGGTTACTGACCACAGATTGAAGACAAACTACGAGCTCACATCTTTTCTTGATGGTGACATAGAAGATGCTGTTCAGTCTTGCGCTACAATGGAGCAAAAGGAGCTTCTGGAAGAACTTGCTGAATCTGTAGGAGCTACGGCTGGCTGA 1275 0.4533 MYAPFPSLSSHSVAMNSLTASFTARICVTRRDLLHVRRRSTFSRVAIKLTHPRIVCMAEPYLITKLDSAEKTWKELSVKLADPDIVSDPKEYQKLAQSVAELDEVVSVYRKFKDCEKLLEETKALAKDAGNDEDMVEMISYEIESLSKQLAELEDRLKVLLLPSDPLDARNIMIEVRAGTGGDEAGIWAGDLVRMYERYSERNSWKYSLVSSSAAEKGGYKTYVMEIKGNRVYSKLKYESGVHRVQRVPLTEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLKNKNRAFQLLRAKLYEIKVREQQESLRNQRKSQVGTGARAEKIRTYNYKDNRVTDHRLKTNYELTSFLDGDIEDAVQSCATMEQKELLEELAESVGATAG* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0679 424 SMART PCRF_a_2 124 239 IPR005139 GO:0006415
Vra3g0679 424 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 288 304 IPR000352 GO:0003747|GO:0006415
Vra3g0679 424 PANTHER PEPTIDE CHAIN RELEASE FACTOR APG3, CHLOROPLASTIC 36 422 - -
Vra3g0679 424 Hamap Peptide chain release factor 1 [prfA]. 62 416 IPR004373 GO:0006415|GO:0016149
Vra3g0679 424 Gene3D - 278 336 - -
Vra3g0679 424 Coils Coil 423 424 - -
Vra3g0679 424 SUPERFAMILY Release factor 71 412 IPR045853 -
Vra3g0679 424 Gene3D - 337 419 - -
Vra3g0679 424 PANTHER LD18447P 36 422 - -
Vra3g0679 424 TIGRFAM prfA: peptide chain release factor 1 58 417 IPR004373 GO:0006415|GO:0016149
Vra3g0679 424 Pfam PCRF domain 70 264 IPR005139 GO:0006415
Vra3g0679 424 Gene3D - 168 277 - -
Vra3g0679 424 Pfam RF-1 domain 271 381 IPR000352 GO:0003747|GO:0006415
Vra3g0679 424 Coils Coil 136 156 - -
Vra3g0679 424 Gene3D - 56 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0679 Vra-Chr3 7255610 7260644 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0679 K02835 - gmx:100805037 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0679 3 7255610 7260644 Vra3g0679 3 7255610 7260644 ECH